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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5644 1rie  )  ( 1607 1fqt_A)     0.9000   0.9999   2.0627 (   0   25   36)   0     0.9000   0.9999   10   9
( 5644 1rie  )  ( 1768 1g8k_B)     0.8998   0.8181   2.8774 (   0   26   36)   0     0.8998   0.8181   10  11
( 5644 1rie  )  ( 2966 1jm1_A)     0.8999   0.5294   2.2378 (   0   25   36)   0     0.8999   0.5294   10  17
( 5644 1rie  )  ( 4440 1nyk_A)     0.6000   0.5000   2.2342 (   0    9   15)   0     0.7996   0.6665   10  12
( 5644 1rie  )  ( 4541 1o7n_A)     0.9000   0.6923   1.9379 (   0   25   36)   0     0.9932   0.7674   10  13
( 5644 1rie  )  ( 5622 1rfs  )     0.7999   0.8888   2.7312 (   0   19   28)   0     0.7999   0.8888   10   9
( 5644 1rie  )  ( 5644 1rie  )     1.0000   1.0000   0.0000 (   0   35   45)   0     1.0000   1.0000   10  10

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