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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3071 1jvb_A)  ( 1435 1f8f_A)     0.9197   0.9197   3.2264 (   2   54   66)   0     0.9197   0.9197   13  13
( 3071 1jvb_A)  ( 1707 1g31_A)     0.3077   0.5711   6.1066 (   0    6    6)   0     0.3846   0.7143   13   7
( 3071 1jvb_A)  ( 1955 1gu7_A)     0.8384   0.9053   3.9296 (   2   39   55)   0     0.8384   0.9053   13  12
( 3071 1jvb_A)  ( 2045 1h2b_A)     0.9199   0.9199   2.3244 (   2   54   66)   0     0.9199   0.9199   13  13
( 3071 1jvb_A)  ( 2193 1het_A)     0.8456   0.8456   3.0801 (   1   41   55)   0     0.8456   0.8456   13  13
( 3071 1jvb_A)  ( 2673 1iz0_A)     0.4853   0.5064   2.8575 (   5   26   36)   0     0.4853   0.5064   13  10
( 3071 1jvb_A)  ( 3016 1jqb_A)     0.6557   0.6730   3.0249 (   6   44   55)   0     0.6557   0.6730   13  12
( 3071 1jvb_A)  ( 3071 1jvb_A)     1.0000   1.0000   0.0000 (   0   66   78)   0     1.0000   1.0000   13  13
( 3071 1jvb_A)  ( 3384 1kol_A)     0.7393   0.7393   3.0800 (   5   46   55)   0     0.7393   0.7393   13  13
( 3071 1jvb_A)  ( 4548 1o89_A)     0.7629   0.9774   2.5798 (   2   36   45)   0     0.7629   0.9774   13  10
( 3071 1jvb_A)  ( 4881 1p3h_A)     0.3077   0.5711   6.2103 (   0    6    6)   0     0.3077   0.5711   13   7
( 3071 1jvb_A)  ( 5044 1pl7_A)     0.9037   0.9716   3.6026 (   3   51   66)   0     0.9037   0.9716   13  12
( 3071 1jvb_A)  ( 5405 1qor_A)     0.8423   0.9911   2.5281 (   2   46   55)   0     0.8423   0.9911   13  11
( 3071 1jvb_A)  ( 6113 1uuf_A)     0.8259   0.8871   2.5360 (   3   45   55)   0     0.8259   0.8871   13  12
( 3071 1jvb_A)  ( 6273 1vj0_A)     0.9969   0.9969   2.6421 (   2   61   78)   0     0.9969   0.9969   13  13
( 3071 1jvb_A)  ( 6275 1vj1_A)     0.8115   0.8668   4.2030 (   3   39   55)   0     0.8115   0.8668   13  12

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