------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 275 1b34_A) ( 275 1b34_A) 1.0000 1.0000 0.0000 ( 0 24 28) 0 1.0000 1.0000 8 8 ( 275 1b34_A) ( 276 1b34_B) 0.7499 0.9998 2.7899 ( 0 11 15) 0 0.7499 0.9998 8 6 ( 275 1b34_A) ( 740 1d3b_A) 0.8750 0.8750 1.9942 ( 0 16 21) 0 0.8750 0.8750 8 8 ( 275 1b34_A) ( 741 1d3b_B) 0.8508 0.9549 4.2650 ( 1 15 21) 0 0.8508 0.9549 8 7 ( 275 1b34_A) ( 2220 1hk9_A) 0.5526 0.6326 4.4120 ( 1 7 10) 0 0.5526 0.6326 8 6 ( 275 1b34_A) ( 2449 1ib8_A) 0.7499 0.9996 3.2323 ( 0 11 15) 0 0.7499 0.9996 8 6 ( 275 1b34_A) ( 3394 1kq1_A) 0.7499 0.9998 2.7414 ( 0 11 15) 0 0.7499 0.9998 8 6 ( 275 1b34_A) ( 3640 1ljo_A) 0.8564 0.9650 2.5427 ( 1 16 21) 0 0.8564 0.9650 8 7 ( 275 1b34_A) ( 3843 1m5q_1) 0.7500 0.5000 2.6343 ( 0 10 15) 0 0.7500 0.5000 8 12 ( 275 1b34_A) ( 3924 1mgq_A) 0.7142 0.7142 2.6132 ( 1 11 15) 0 0.7142 0.7142 8 8 ( 275 1b34_A) ( 4179 1n9r_A) 0.8558 0.8558 4.4679 ( 1 16 21) 0 0.8558 0.8558 8 8 -------------------------------------------------------------------------------------------------------------------------