------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3394 1kq1_A) ( 275 1b34_A) 0.9998 0.7499 2.7414 ( 0 11 15) 0 0.9998 0.7499 6 8 ( 3394 1kq1_A) ( 276 1b34_B) 0.9998 0.9998 2.6952 ( 0 11 15) 0 0.9998 0.9998 6 6 ( 3394 1kq1_A) ( 740 1d3b_A) 0.9999 0.7500 1.6769 ( 0 11 15) 0 0.9999 0.7500 6 8 ( 3394 1kq1_A) ( 741 1d3b_B) 0.8333 0.7143 2.5446 ( 0 8 10) 0 0.8333 0.7143 6 7 ( 3394 1kq1_A) ( 2220 1hk9_A) 0.9999 0.9999 1.4197 ( 0 11 15) 0 0.9999 0.9999 6 6 ( 3394 1kq1_A) ( 2449 1ib8_A) 0.9992 0.9992 3.7813 ( 0 11 15) 0 0.9992 0.9992 6 6 ( 3394 1kq1_A) ( 3394 1kq1_A) 1.0000 1.0000 0.0000 ( 0 12 15) 0 1.0000 1.0000 6 6 ( 3394 1kq1_A) ( 3640 1ljo_A) 0.9986 0.8565 4.4023 ( 0 10 15) 0 0.9986 0.8565 6 7 ( 3394 1kq1_A) ( 3843 1m5q_1) 0.9999 0.5000 2.3217 ( 0 11 15) 0 0.9999 0.5000 6 12 ( 3394 1kq1_A) ( 3924 1mgq_A) 0.9979 0.7495 4.8382 ( 0 10 15) 0 0.9979 0.7495 6 8 ( 3394 1kq1_A) ( 4179 1n9r_A) 0.9999 0.7500 2.4233 ( 0 11 15) 0 0.9999 0.7500 6 8 -------------------------------------------------------------------------------------------------------------------------