------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3640 1ljo_A) ( 275 1b34_A) 0.9650 0.8564 2.5427 ( 1 16 21) 0 0.9650 0.8564 7 8 ( 3640 1ljo_A) ( 276 1b34_B) 0.8569 0.9995 3.4335 ( 0 11 15) 0 0.8569 0.9995 7 6 ( 3640 1ljo_A) ( 740 1d3b_A) 0.9721 0.8602 2.1433 ( 1 17 21) 0 0.9721 0.8602 7 8 ( 3640 1ljo_A) ( 741 1d3b_B) 0.9998 0.9998 2.5213 ( 0 17 21) 0 0.9998 0.9998 7 7 ( 3640 1ljo_A) ( 2220 1hk9_A) 0.7920 0.8772 4.4936 ( 1 11 15) 0 0.7920 0.8772 7 6 ( 3640 1ljo_A) ( 2449 1ib8_A) 0.7920 0.8772 4.4592 ( 1 11 15) 0 0.7920 0.8772 7 6 ( 3640 1ljo_A) ( 3394 1kq1_A) 0.8565 0.9986 4.4023 ( 0 10 15) 0 0.8565 0.9986 7 6 ( 3640 1ljo_A) ( 3640 1ljo_A) 1.0000 1.0000 0.0000 ( 0 18 21) 0 1.0000 1.0000 7 7 ( 3640 1ljo_A) ( 3843 1m5q_1) 0.8569 0.5000 3.5852 ( 0 11 15) 0 0.8569 0.5000 7 12 ( 3640 1ljo_A) ( 3924 1mgq_A) 0.9719 0.8602 2.7769 ( 1 17 21) 0 0.9719 0.8602 7 8 ( 3640 1ljo_A) ( 4179 1n9r_A) 0.9997 0.8748 2.9673 ( 0 17 21) 0 0.9997 0.8748 7 8 -------------------------------------------------------------------------------------------------------------------------