------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 741 1d3b_B) ( 275 1b34_A) 0.9549 0.8508 4.2650 ( 1 15 21) 0 0.9549 0.8508 7 8 ( 741 1d3b_B) ( 276 1b34_B) 0.8564 0.9984 4.5567 ( 0 11 15) 0 0.8564 0.9984 7 6 ( 741 1d3b_B) ( 740 1d3b_A) 0.9648 0.8563 3.0437 ( 1 16 21) 0 0.9648 0.8563 7 8 ( 741 1d3b_B) ( 741 1d3b_B) 1.0000 1.0000 0.0000 ( 0 17 21) 0 1.0000 1.0000 7 7 ( 741 1d3b_B) ( 2220 1hk9_A) 0.7143 0.8333 1.8772 ( 0 8 10) 0 0.7143 0.8333 7 6 ( 741 1d3b_B) ( 2449 1ib8_A) 0.8560 0.9976 5.0231 ( 0 10 15) 0 0.8560 0.9976 7 6 ( 741 1d3b_B) ( 3394 1kq1_A) 0.7143 0.8333 2.5446 ( 0 8 10) 0 0.7143 0.8333 7 6 ( 741 1d3b_B) ( 3640 1ljo_A) 0.9998 0.9998 2.5213 ( 0 17 21) 0 0.9998 0.9998 7 7 ( 741 1d3b_B) ( 3843 1m5q_1) 0.8563 0.4999 4.6305 ( 0 11 15) 0 0.8563 0.4999 7 12 ( 741 1d3b_B) ( 3924 1mgq_A) 0.9991 0.8745 3.9539 ( 0 16 21) 0 0.9991 0.8745 7 8 ( 741 1d3b_B) ( 4179 1n9r_A) 0.9997 0.8749 2.9013 ( 0 17 21) 0 0.9997 0.8749 7 8 -------------------------------------------------------------------------------------------------------------------------