------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3363 1knm_A) ( 67 1a8d ) 0.5555 0.3125 4.6740 ( 0 9 10) 0 0.5555 0.3249 9 16 ( 3363 1knm_A) ( 218 1ava_C) 0.5551 0.4544 6.7095 ( 0 6 10) 0 0.9541 0.8002 9 11 ( 3363 1knm_A) ( 223 1avw_B) 0.5554 0.3846 4.8322 ( 0 9 10) 0 0.9992 0.6922 9 13 ( 3363 1knm_A) ( 372 1bfg ) 0.7777 0.7000 2.6367 ( 0 19 21) 0 0.7777 0.7000 9 10 ( 3363 1knm_A) ( 822 1dfc_A) 0.4161 0.3823 6.5788 ( 1 6 6) 0 0.8232 0.7587 9 10 ( 3363 1knm_A) ( 823 1dfc_A) 0.6962 0.6475 2.7848 ( 2 18 21) 0 0.6962 0.6475 9 10 ( 3363 1knm_A) ( 824 1dfc_A) 0.6666 0.8569 3.4175 ( 0 12 15) 0 0.6666 0.8569 9 7 ( 3363 1knm_A) ( 918 1dqg_A) 0.9972 0.8171 2.5063 ( 1 31 36) 0 0.9972 0.8172 9 11 ( 3363 1knm_A) ( 1240 1epw_A) 0.5554 0.3333 5.0864 ( 0 9 10) 0 0.7220 0.5130 9 15 ( 3363 1knm_A) ( 1822 1ggp_B) 0.4444 0.4444 4.9167 ( 0 5 6) 0 0.5562 0.5562 9 9 ( 3363 1knm_A) ( 2171 1hcd ) 0.9988 0.7497 4.1940 ( 0 31 36) 0 0.9988 0.7497 9 12 ( 3363 1knm_A) ( 2306 1hwm_B) 0.8888 0.7273 2.2746 ( 0 25 28) 0 0.9998 0.8181 9 11 ( 3363 1knm_A) ( 2495 1ihk_A) 0.8833 0.6145 4.2701 ( 1 23 28) 0 0.8844 0.6147 9 13 ( 3363 1knm_A) ( 2692 1j0s_A) 0.9996 0.6922 3.2856 ( 0 32 36) 0 0.9996 0.6922 9 13 ( 3363 1knm_A) ( 2963 1jlx_A) 0.9973 0.7493 3.1263 ( 1 32 36) 0 0.9991 0.7498 9 12 ( 3363 1knm_A) ( 2964 1jlx_A) 0.9964 0.7491 3.9333 ( 1 31 36) 0 0.9995 0.7499 9 12 ( 3363 1knm_A) ( 3363 1knm_A) 1.0000 1.0000 0.0000 ( 0 32 36) 0 1.0000 1.0000 9 9 ( 3363 1knm_A) ( 3519 1l2h_A) 0.7773 0.6362 4.5958 ( 0 19 21) 0 0.8883 0.7271 9 11 ( 3363 1knm_A) ( 3810 1m2t_B) 0.8859 0.8859 1.8823 ( 1 26 28) 0 0.8859 0.8859 9 9 ( 3363 1knm_A) ( 3811 1m2t_B) 0.9999 0.7500 2.0579 ( 0 31 36) 0 0.9999 0.7500 9 12 ( 3363 1knm_A) ( 3906 1md6_A) 0.9555 0.6375 3.4117 ( 2 30 36) 0 0.9967 0.6425 9 14 ( 3363 1knm_A) ( 4122 1n4k_A) 0.9987 0.7497 4.3338 ( 0 30 36) 0 0.9993 0.7498 9 12 ( 3363 1knm_A) ( 5136 1pwa_A) 0.7777 0.7000 2.9228 ( 0 18 21) 0 0.7777 0.7000 9 10 ( 3363 1knm_A) ( 5184 1q1u_A) 0.7776 0.6363 3.3039 ( 0 19 21) 0 0.9540 0.8002 9 11 ( 3363 1knm_A) ( 5421 1qqk_A) 0.5555 0.8329 4.1190 ( 0 9 10) 0 0.5555 0.8329 9 6 ( 3363 1knm_A) ( 5485 1qxm_A) 0.9998 0.6923 2.7560 ( 0 31 36) 0 0.9998 0.6923 9 13 ( 3363 1knm_A) ( 5486 1qxm_A) 0.9996 0.6923 3.1159 ( 0 32 36) 0 0.9997 0.6923 9 13 ( 3363 1knm_A) ( 6326 1wba ) 0.9593 0.7397 4.6836 ( 2 31 36) 0 0.9990 0.7498 9 12 ( 3363 1knm_A) ( 6558 3bta_A) 0.9970 0.6918 3.0821 ( 1 31 36) 0 0.9970 0.6918 9 13 -------------------------------------------------------------------------------------------------------------------------