------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4122 1n4k_A) ( 67 1a8d ) 0.9985 0.7496 4.2303 ( 1 53 66) 0 0.9986 0.7497 12 16 ( 4122 1n4k_A) ( 218 1ava_C) 0.7947 0.8521 2.8600 ( 3 37 45) 0 0.8317 0.9066 12 11 ( 4122 1n4k_A) ( 223 1avw_B) 0.9774 0.9077 2.5005 ( 3 54 66) 0 0.9983 0.9219 12 13 ( 4122 1n4k_A) ( 372 1bfg ) 0.8332 0.9998 2.8255 ( 0 36 45) 0 0.8332 0.9998 12 10 ( 4122 1n4k_A) ( 822 1dfc_A) 0.8331 0.9995 3.3318 ( 0 37 45) 0 0.8332 0.9997 12 10 ( 4122 1n4k_A) ( 823 1dfc_A) 0.4091 0.4820 8.5369 ( 1 8 10) 0 0.8236 0.9766 12 10 ( 4122 1n4k_A) ( 824 1dfc_A) 0.5833 0.9992 3.8190 ( 0 17 21) 0 0.5833 0.9993 12 7 ( 4122 1n4k_A) ( 918 1dqg_A) 0.9152 0.9978 4.5960 ( 1 46 55) 0 0.9154 0.9980 12 11 ( 4122 1n4k_A) ( 1240 1epw_A) 0.9420 0.7793 5.0074 ( 4 56 66) 0 0.9924 0.7975 12 15 ( 4122 1n4k_A) ( 1822 1ggp_B) 0.6999 0.8401 4.7390 ( 3 30 36) 0 0.6999 0.8401 12 9 ( 4122 1n4k_A) ( 2171 1hcd ) 0.9784 0.9784 3.6576 ( 3 55 66) 0 0.9787 0.9787 12 12 ( 4122 1n4k_A) ( 2306 1hwm_B) 0.9163 0.9994 3.5994 ( 0 46 55) 0 0.9163 0.9994 12 11 ( 4122 1n4k_A) ( 2495 1ihk_A) 0.9153 0.8452 4.4392 ( 1 44 55) 0 0.9154 0.8453 12 13 ( 4122 1n4k_A) ( 2692 1j0s_A) 0.9986 0.9221 4.1894 ( 1 56 66) 0 0.9986 0.9221 12 13 ( 4122 1n4k_A) ( 2963 1jlx_A) 0.9992 0.9992 3.3927 ( 1 55 66) 0 0.9992 0.9992 12 12 ( 4122 1n4k_A) ( 2964 1jlx_A) 0.9992 0.9992 3.3714 ( 1 54 66) 0 0.9994 0.9994 12 12 ( 4122 1n4k_A) ( 3363 1knm_A) 0.7497 0.9987 4.3338 ( 0 30 36) 0 0.7498 0.9993 12 9 ( 4122 1n4k_A) ( 3519 1l2h_A) 0.8332 0.9089 2.9395 ( 0 37 45) 0 0.8332 0.9089 12 11 ( 4122 1n4k_A) ( 3810 1m2t_B) 0.7489 0.9955 4.6634 ( 1 31 36) 0 0.7490 0.9957 12 9 ( 4122 1n4k_A) ( 3811 1m2t_B) 0.9991 0.9991 3.9235 ( 0 55 66) 0 0.9991 0.9991 12 12 ( 4122 1n4k_A) ( 3906 1md6_A) 0.9940 0.8544 3.9995 ( 2 53 66) 0 0.9968 0.8557 12 14 ( 4122 1n4k_A) ( 4122 1n4k_A) 1.0000 1.0000 0.0000 ( 0 56 66) 0 1.0000 1.0000 12 12 ( 4122 1n4k_A) ( 5136 1pwa_A) 0.8332 0.9997 2.8840 ( 0 37 45) 0 0.8332 0.9997 12 10 ( 4122 1n4k_A) ( 5184 1q1u_A) 0.9154 0.9980 4.3446 ( 1 45 55) 0 0.9154 0.9980 12 11 ( 4122 1n4k_A) ( 5421 1qqk_A) 0.5000 0.9997 2.9612 ( 0 14 15) 0 0.5000 0.9997 12 6 ( 4122 1n4k_A) ( 5485 1qxm_A) 0.9994 0.9227 3.5896 ( 0 53 66) 0 0.9994 0.9227 12 13 ( 4122 1n4k_A) ( 5486 1qxm_A) 0.9993 0.9226 3.6193 ( 0 55 66) 0 0.9994 0.9226 12 13 ( 4122 1n4k_A) ( 6326 1wba ) 0.9956 0.9956 2.2517 ( 2 55 66) 0 0.9982 0.9982 12 12 ( 4122 1n4k_A) ( 6558 3bta_A) 0.9159 0.8456 4.2611 ( 0 45 55) 0 0.9159 0.8456 12 13 -------------------------------------------------------------------------------------------------------------------------