------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5485 1qxm_A) ( 67 1a8d ) 0.7686 0.6248 4.1765 ( 1 37 45) 0 0.9217 0.7495 13 16 ( 5485 1qxm_A) ( 218 1ava_C) 0.7683 0.9070 4.7503 ( 1 36 45) 0 0.7683 0.9070 13 11 ( 5485 1qxm_A) ( 223 1avw_B) 0.9194 0.9194 3.8939 ( 2 54 66) 0 0.9215 0.9215 13 13 ( 5485 1qxm_A) ( 372 1bfg ) 0.7692 0.9999 1.3786 ( 0 37 45) 0 0.7692 0.9999 13 10 ( 5485 1qxm_A) ( 822 1dfc_A) 0.7692 0.9999 2.3178 ( 0 38 45) 0 0.7692 0.9999 13 10 ( 5485 1qxm_A) ( 823 1dfc_A) 0.7636 0.9796 2.4288 ( 2 37 45) 0 0.7636 0.9796 13 10 ( 5485 1qxm_A) ( 824 1dfc_A) 0.5385 0.9999 1.9278 ( 0 15 21) 0 0.5385 0.9999 13 7 ( 5485 1qxm_A) ( 918 1dqg_A) 0.8457 0.9989 3.3771 ( 1 46 55) 0 0.8458 0.9992 13 11 ( 5485 1qxm_A) ( 1240 1epw_A) 0.5575 0.5389 4.4973 ( 8 47 55) 0 0.8833 0.7796 13 15 ( 5485 1qxm_A) ( 1822 1ggp_B) 0.6612 0.8541 3.5077 ( 3 31 36) 0 0.6612 0.8541 13 9 ( 5485 1qxm_A) ( 2171 1hcd ) 0.9096 0.9802 2.8592 ( 3 56 66) 0 0.9202 0.9957 13 12 ( 5485 1qxm_A) ( 2306 1hwm_B) 0.8460 0.9997 2.8922 ( 0 46 55) 0 0.8460 0.9997 13 11 ( 5485 1qxm_A) ( 2495 1ihk_A) 0.8458 0.8458 2.3656 ( 1 44 55) 0 0.8458 0.8458 13 13 ( 5485 1qxm_A) ( 2692 1j0s_A) 0.9221 0.9221 4.1858 ( 1 55 66) 0 0.9222 0.9222 13 13 ( 5485 1qxm_A) ( 2963 1jlx_A) 0.9228 0.9995 2.7558 ( 1 56 66) 0 0.9229 0.9998 13 12 ( 5485 1qxm_A) ( 2964 1jlx_A) 0.9230 0.9998 2.6361 ( 0 56 66) 0 0.9230 0.9998 13 12 ( 5485 1qxm_A) ( 3363 1knm_A) 0.6923 0.9998 2.7560 ( 0 31 36) 0 0.6923 0.9998 13 9 ( 5485 1qxm_A) ( 3519 1l2h_A) 0.7692 0.9089 2.8317 ( 0 36 45) 0 0.7692 0.9089 13 11 ( 5485 1qxm_A) ( 3810 1m2t_B) 0.6918 0.9970 2.9669 ( 1 31 36) 0 0.6919 0.9976 13 9 ( 5485 1qxm_A) ( 3811 1m2t_B) 0.9228 0.9995 3.3026 ( 0 56 66) 0 0.9229 0.9998 13 12 ( 5485 1qxm_A) ( 3906 1md6_A) 0.9228 0.8569 2.4318 ( 1 53 66) 0 0.9228 0.8569 13 14 ( 5485 1qxm_A) ( 4122 1n4k_A) 0.9227 0.9994 3.5896 ( 0 53 66) 0 0.9227 0.9994 13 12 ( 5485 1qxm_A) ( 5136 1pwa_A) 0.7692 0.9999 1.6284 ( 0 38 45) 0 0.7692 0.9999 13 10 ( 5485 1qxm_A) ( 5184 1q1u_A) 0.8459 0.9993 2.2124 ( 1 45 55) 0 0.8459 0.9993 13 11 ( 5485 1qxm_A) ( 5421 1qqk_A) 0.4615 0.9998 2.6233 ( 0 14 15) 0 0.4615 0.9998 13 6 ( 5485 1qxm_A) ( 5485 1qxm_A) 1.0000 1.0000 0.0000 ( 0 68 78) 0 1.0000 1.0000 13 13 ( 5485 1qxm_A) ( 5486 1qxm_A) 0.9231 0.9231 1.5086 ( 0 57 66) 0 0.9231 0.9231 13 13 ( 5485 1qxm_A) ( 6326 1wba ) 0.9223 0.9989 3.8158 ( 1 54 66) 0 0.9223 0.9989 13 12 ( 5485 1qxm_A) ( 6558 3bta_A) 0.8457 0.8457 3.2741 ( 1 46 55) 0 0.8458 0.8458 13 13 -------------------------------------------------------------------------------------------------------------------------