------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6326 1wba ) ( 67 1a8d ) 0.9744 0.7437 4.5571 ( 3 53 66) 0 0.9969 0.7493 12 16 ( 6326 1wba ) ( 218 1ava_C) 0.8328 0.9082 2.9429 ( 1 39 45) 0 0.8328 0.9082 12 11 ( 6326 1wba ) ( 223 1avw_B) 0.9997 0.9229 1.5557 ( 1 57 66) 0 0.9997 0.9229 12 13 ( 6326 1wba ) ( 372 1bfg ) 0.8325 0.9979 3.7258 ( 1 37 45) 0 0.8325 0.9980 12 10 ( 6326 1wba ) ( 822 1dfc_A) 0.8248 0.9794 3.1237 ( 2 37 45) 0 0.8326 0.9982 12 10 ( 6326 1wba ) ( 823 1dfc_A) 0.4166 0.4998 6.0311 ( 0 8 10) 0 0.7496 0.8991 12 10 ( 6326 1wba ) ( 824 1dfc_A) 0.4166 0.7137 5.3949 ( 0 9 10) 0 0.5812 0.9710 12 7 ( 6326 1wba ) ( 918 1dqg_A) 0.9093 0.9887 5.1349 ( 2 46 55) 0 0.9159 0.9988 12 11 ( 6326 1wba ) ( 1240 1epw_A) 0.8091 0.7175 5.6036 ( 6 56 66) 0 0.9417 0.7792 12 15 ( 6326 1wba ) ( 1822 1ggp_B) 0.4371 0.4521 4.5677 ( 5 23 28) 0 0.6938 0.8252 12 9 ( 6326 1wba ) ( 2171 1hcd ) 0.8101 0.8101 4.0617 ( 6 56 66) 0 0.9928 0.9928 12 12 ( 6326 1wba ) ( 2306 1hwm_B) 0.9104 0.9905 3.8551 ( 2 46 55) 0 0.9156 0.9984 12 11 ( 6326 1wba ) ( 2495 1ihk_A) 0.9096 0.8414 4.3925 ( 2 45 55) 0 0.9128 0.8436 12 13 ( 6326 1wba ) ( 2692 1j0s_A) 0.9805 0.9098 4.3014 ( 3 57 66) 0 0.9946 0.9194 12 13 ( 6326 1wba ) ( 2963 1jlx_A) 0.9990 0.9990 3.7410 ( 1 56 66) 0 0.9992 0.9992 12 12 ( 6326 1wba ) ( 2964 1jlx_A) 0.9991 0.9991 3.6320 ( 1 56 66) 0 0.9991 0.9991 12 12 ( 6326 1wba ) ( 3363 1knm_A) 0.7397 0.9593 4.6836 ( 2 31 36) 0 0.7498 0.9990 12 9 ( 6326 1wba ) ( 3519 1l2h_A) 0.8327 0.9082 2.9051 ( 1 38 45) 0 0.8327 0.9082 12 11 ( 6326 1wba ) ( 3810 1m2t_B) 0.7051 0.8534 4.8393 ( 3 31 36) 0 0.7491 0.9962 12 9 ( 6326 1wba ) ( 3811 1m2t_B) 0.9944 0.9944 4.3069 ( 2 55 66) 0 0.9982 0.9982 12 12 ( 6326 1wba ) ( 3906 1md6_A) 0.9945 0.8546 3.8817 ( 2 54 66) 0 0.9972 0.8559 12 14 ( 6326 1wba ) ( 4122 1n4k_A) 0.9956 0.9956 2.2517 ( 2 55 66) 0 0.9982 0.9982 12 12 ( 6326 1wba ) ( 5136 1pwa_A) 0.8327 0.9984 3.4206 ( 1 39 45) 0 0.8327 0.9984 12 10 ( 6326 1wba ) ( 5184 1q1u_A) 0.9101 0.9900 4.3217 ( 2 46 55) 0 0.9128 0.9940 12 11 ( 6326 1wba ) ( 5421 1qqk_A) 0.5000 0.9998 2.5679 ( 0 14 15) 0 0.5000 0.9998 12 6 ( 6326 1wba ) ( 5485 1qxm_A) 0.9989 0.9223 3.8158 ( 1 54 66) 0 0.9989 0.9223 12 13 ( 6326 1wba ) ( 5486 1qxm_A) 0.9953 0.9199 3.6458 ( 2 56 66) 0 0.9969 0.9210 12 13 ( 6326 1wba ) ( 6326 1wba ) 1.0000 1.0000 0.0000 ( 0 58 66) 0 1.0000 1.0000 12 12 ( 6326 1wba ) ( 6558 3bta_A) 0.9151 0.8451 4.6682 ( 1 46 55) 0 0.9152 0.8451 12 13 -------------------------------------------------------------------------------------------------------------------------