------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 822 1dfc_A) ( 67 1a8d ) 0.9994 0.6249 3.5193 ( 0 37 45) 0 0.9994 0.6249 10 16 ( 822 1dfc_A) ( 218 1ava_C) 0.9136 0.8518 3.7751 ( 3 37 45) 0 0.9136 0.8518 10 11 ( 822 1dfc_A) ( 223 1avw_B) 0.9794 0.7635 3.0497 ( 2 37 45) 0 0.9970 0.7684 10 13 ( 822 1dfc_A) ( 372 1bfg ) 0.8000 0.8000 1.5558 ( 0 23 28) 0 0.9999 0.9999 10 10 ( 822 1dfc_A) ( 822 1dfc_A) 1.0000 1.0000 0.0000 ( 0 40 45) 0 1.0000 1.0000 10 10 ( 822 1dfc_A) ( 823 1dfc_A) 0.8000 0.8000 2.0865 ( 0 23 28) 0 0.9795 0.9795 10 10 ( 822 1dfc_A) ( 824 1dfc_A) 0.7000 0.9998 2.6396 ( 0 17 21) 0 0.7000 0.9998 10 7 ( 822 1dfc_A) ( 918 1dqg_A) 0.8997 0.8180 3.4229 ( 0 30 36) 0 0.8997 0.8180 10 11 ( 822 1dfc_A) ( 1240 1epw_A) 0.7085 0.5601 3.4490 ( 4 32 36) 0 0.9997 0.6666 10 15 ( 822 1dfc_A) ( 1822 1ggp_B) 0.6999 0.7777 3.2499 ( 0 19 21) 0 0.8030 0.8538 10 9 ( 822 1dfc_A) ( 2171 1hcd ) 0.9832 0.8264 2.9365 ( 2 39 45) 0 0.9833 0.8265 10 12 ( 822 1dfc_A) ( 2306 1hwm_B) 0.8998 0.8181 3.0769 ( 0 33 36) 0 0.8998 0.8181 10 11 ( 822 1dfc_A) ( 2495 1ihk_A) 0.8974 0.6916 3.1489 ( 1 28 36) 0 0.9999 0.7692 10 13 ( 822 1dfc_A) ( 2692 1j0s_A) 0.5995 0.4614 6.4001 ( 0 11 15) 0 0.9981 0.7687 10 13 ( 822 1dfc_A) ( 2963 1jlx_A) 0.9988 0.8328 1.6566 ( 1 38 45) 0 0.9999 0.8333 10 12 ( 822 1dfc_A) ( 2964 1jlx_A) 0.9986 0.8328 2.7275 ( 1 38 45) 0 0.9999 0.8333 10 12 ( 822 1dfc_A) ( 3363 1knm_A) 0.3823 0.4161 6.5788 ( 1 6 6) 0 0.7587 0.8232 10 9 ( 822 1dfc_A) ( 3519 1l2h_A) 0.8000 0.7273 2.0706 ( 0 24 28) 0 0.9997 0.9089 10 11 ( 822 1dfc_A) ( 3810 1m2t_B) 0.6999 0.7776 3.4510 ( 0 18 21) 0 0.7000 0.7777 10 9 ( 822 1dfc_A) ( 3811 1m2t_B) 0.9997 0.8332 3.0247 ( 0 39 45) 0 0.9997 0.8332 10 12 ( 822 1dfc_A) ( 3906 1md6_A) 0.9796 0.7104 2.3425 ( 2 37 45) 0 0.9998 0.7142 10 14 ( 822 1dfc_A) ( 4122 1n4k_A) 0.9995 0.8331 3.3318 ( 0 37 45) 0 0.9997 0.8332 10 12 ( 822 1dfc_A) ( 5136 1pwa_A) 0.8000 0.8000 2.1129 ( 0 24 28) 0 0.9999 0.9999 10 10 ( 822 1dfc_A) ( 5184 1q1u_A) 0.8980 0.8169 3.1547 ( 1 30 36) 0 0.9999 0.9090 10 11 ( 822 1dfc_A) ( 5421 1qqk_A) 0.6000 0.9999 2.1781 ( 0 15 15) 0 0.6000 0.9999 10 6 ( 822 1dfc_A) ( 5485 1qxm_A) 0.9999 0.7692 2.3178 ( 0 38 45) 0 0.9999 0.7692 10 13 ( 822 1dfc_A) ( 5486 1qxm_A) 0.9999 0.7692 1.8309 ( 0 39 45) 0 0.9999 0.7692 10 13 ( 822 1dfc_A) ( 6326 1wba ) 0.9794 0.8248 3.1237 ( 2 37 45) 0 0.9982 0.8326 10 12 ( 822 1dfc_A) ( 6558 3bta_A) 0.5998 0.4615 5.0438 ( 0 12 15) 0 0.8983 0.6919 10 13 -------------------------------------------------------------------------------------------------------------------------