------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [805, 74]: Comparing 1ddg_A and 1a8p, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 23 (11 H + 12 S) secondary structure elements in 1a8p, of which 8 satisfy the size requirements. 2.57148 [ 1.14350] ((1 . 1) (2 . 3) (3 . 4) (13 . 5) (14 . 6) (17 . 7) (18 . 8)) 3.982 {0/19:21} B:0 4.50038 [ 2.00429] ((1 . 4) (2 . 5) (3 . 6) (4 . 7)) 9.749 {0/5:6} B:0 5.08030 [ 4.06134] ((1 . 1) (2 . 3) (3 . 4) (7 . 7)) 8.137 {2/5:6} B:0 5.08042 [ 4.06157] ((3 . 1) (5 . 2) (6 . 3) (13 . 8)) 9.579 {2/5:6} B:0 5.08086 [ 4.06242] ((13 . 3) (14 . 4) (15 . 5) (18 . 8)) 12.378 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.4443 [and 1/min{score2}: 0.9946] [805, 657]: Comparing 1ddg_A and 1cqx_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 26 (14 H + 12 S) secondary structure elements in 1cqx_A, of which 7 satisfy the size requirements. 2.57146 [ 1.00047] ((1 . 8) (2 . 9) (3 . 10) (13 . 11) (14 . 12) (17 . 13) (18 . 14)) 3.332 {0/19:21} B:0 3.00002 [ 1.16697] ((1 . 8) (2 . 9) (3 . 10) (13 . 11) (14 . 12) (18 . 14)) 3.351 {0/13:15} B:0 4.50047 [ 1.75791] ((1 . 10) (2 . 11) (3 . 12) (4 . 13)) 10.285 {0/5:6} B:0 4.50066 [ 1.76113] ((1 . 8) (2 . 9) (3 . 10) (8 . 13)) 11.209 {0/5:6} B:0 4.54334 [ 2.24509] ((2 . 10) (14 . 11) (15 . 12) (17 . 13)) 6.477 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.3889 [and 1/min{score2}: 0.9995] [805, 725]: Comparing 1ddg_A and 1d1n_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 7 (0 H + 7 S) secondary structure elements in 1d1n_A, of which 7 satisfy the size requirements. 4.80634 [ 3.39575] ((13 . 2) (15 . 5) (16 . 6) (18 . 7)) 9.627 {2/6:6} B:0 4.80650 [ 3.39621] ((13 . 1) (14 . 2) (15 . 3) (18 . 6)) 10.749 {2/6:6} B:0 3.00003 [ 1.16726] ((1 . 3) (2 . 7) (3 . 6) (13 . 2) (14 . 1) (18 . 5)) 3.966 {0/14:15} B:3 3.60001 [ 1.40021] ((2 . 7) (3 . 6) (13 . 2) (14 . 1) (18 . 5)) 3.500 {0/9:10} B:3 SIMILARITY (1/min{score1}): 0.3333 [and 1/min{score2}: 0.8567] [805, 728]: Comparing 1ddg_A and 1d2e_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 35 (11 H + 24 S) secondary structure elements in 1d2e_A, of which 10 satisfy the size requirements. 4.52131 [ 2.61671] ((14 . 17) (15 . 18) (16 . 19) (18 . 22)) 9.118 {1/6:6} B:0 4.52290 [ 2.62491] ((1 . 21) (2 . 22) (3 . 25) (5 . 27)) 14.613 {1/6:6} B:0 4.80749 [ 3.57400] ((2 . 17) (3 . 19) (5 . 21) (6 . 22)) 14.325 {2/6:6} B:0 2.57172 [ 1.43026] ((1 . 21) (2 . 27) (3 . 20) (13 . 24) (14 . 17) (15 . 18) (16 . 19)) 5.993 {0/15:21} B:2 3.00007 [ 1.66705] ((1 . 21) (2 . 27) (3 . 20) (13 . 24) (14 . 17) (15 . 18)) 4.636 {0/11:15} B:2 SIMILARITY (1/min{score1}): 0.3888 [and 1/min{score2}: 0.6992] [805, 778]: Comparing 1ddg_A and 1dar, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 51 (16 H + 35 S) secondary structure elements in 1dar, of which 12 satisfy the size requirements. 4.50025 [ 3.00084] ((1 . 23) (2 . 24) (5 . 28) (6 . 29)) 8.782 {0/5:6} B:0 4.80636 [ 3.78203] ((14 . 29) (15 . 30) (16 . 31) (18 . 33)) 9.789 {2/6:6} B:0 4.86060 [ 4.53609] ((1 . 34) (2 . 28) (14 . 29) (15 . 31) (16 . 30)) 5.533 {4/9:10} B:2 4.86078 [ 4.53632] ((1 . 34) (2 . 28) (13 . 30) (14 . 29) (15 . 31)) 8.968 {4/9:10} B:2 SIMILARITY (1/min{score1}): 0.2222 [and 1/min{score2}: 0.3332] [805, 805]: Comparing 1ddg_A and 1ddg_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (16 . 16) (17 . 17) (18 . 18)) 0.000 {0/134:153} B:0 4.50048 [ 4.50048] ((7 . 8) (10 . 12) (14 . 16) (15 . 18)) 10.338 {0/5:6} B:0 4.50048 [ 4.50048] ((8 . 7) (12 . 10) (16 . 14) (18 . 15)) 10.338 {0/5:6} B:0 4.50048 [ 4.50048] ((1 . 2) (10 . 12) (14 . 16) (15 . 18)) 10.364 {0/6:6} B:0 4.50048 [ 4.50048] ((2 . 1) (12 . 10) (16 . 14) (18 . 15)) 10.364 {0/6:6} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [805, 1232]: Comparing 1ddg_A and 1ep3_B, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 25 (8 H + 17 S) secondary structure elements in 1ep3_B, of which 10 satisfy the size requirements. 2.57144 [ 1.42862] ((1 . 1) (2 . 3) (3 . 5) (13 . 6) (14 . 8) (17 . 9) (18 . 10)) 2.486 {0/19:21} B:0 4.50038 [ 2.50223] ((1 . 5) (2 . 6) (3 . 8) (4 . 9)) 9.782 {0/5:6} B:0 4.52203 [ 2.62044] ((2 . 1) (3 . 3) (4 . 4) (6 . 6)) 12.502 {1/6:6} B:0 4.80612 [ 3.57068] ((14 . 1) (15 . 2) (16 . 3) (17 . 4)) 7.006 {2/6:6} B:0 5.08027 [ 4.14473] ((1 . 1) (2 . 3) (3 . 5) (7 . 9)) 7.461 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.3889 [and 1/min{score2}: 0.7000] [805, 1369]: Comparing 1ddg_A and 1f20_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 33 (17 H + 16 S) secondary structure elements in 1f20_A, of which 20 satisfy the size requirements. 1.18067 [ 1.27007] ((1 . 3) (2 . 4) (3 . 6) (4 . 7) (5 . 8) (7 . 10) (8 . 11) (9 . 12) (10 . 13) (11 . 14) (12 . 15) (13 . 16) (14 . 17) (15 . 18) (16 . 20) (17 . 21) (18 . 22)) 3.831 {10/110:136} B:0 1.19348 [ 1.30141] ((1 . 3) (2 . 4) (3 . 6) (4 . 7) (7 . 10) (8 . 11) (9 . 12) (10 . 13) (11 . 14) (12 . 15) (13 . 16) (14 . 17) (15 . 18) (16 . 20) (17 . 21) (18 . 22)) 2.607 {8/99:120} B:0 1.72960 [ 1.79500] ((1 . 3) (2 . 4) (3 . 6) (4 . 7) (7 . 10) (9 . 11) (11 . 14) (12 . 15) (13 . 16) (14 . 17) (15 . 18) (16 . 20) (17 . 21) (18 . 22)) 2.935 {12/76:91} B:0 1.75764 [ 1.78722] ((1 . 3) (2 . 4) (3 . 6) (4 . 7) (6 . 8) (7 . 10) (8 . 11) (9 . 12) (10 . 13) (11 . 14) (12 . 15) (13 . 16) (14 . 17) (15 . 18) (16 . 20) (17 . 21) (18 . 22)) 4.216 {19/112:136} B:0 1.83463 [ 1.87713] ((1 . 3) (2 . 4) (3 . 6) (4 . 7) (7 . 10) (8 . 11) (9 . 12) (10 . 13) (11 . 14) (12 . 15) (13 . 16) (14 . 17) (15 . 20) (17 . 21) (18 . 22)) 2.496 {15/86:105} B:0 SIMILARITY (1/min{score1}): 0.8470 [and 1/min{score2}: 0.7874] [805, 1410]: Comparing 1ddg_A and 1f60_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 35 (11 H + 24 S) secondary structure elements in 1f60_A, of which 7 satisfy the size requirements. 5.08036 [ 4.03651] ((14 . 19) (15 . 20) (16 . 21) (18 . 23)) 8.887 {2/5:6} B:0 5.08077 [ 4.03734] ((13 . 21) (15 . 23) (16 . 25) (18 . 26)) 11.974 {2/5:6} B:0 3.61316 [ 1.58497] ((1 . 22) (2 . 26) (14 . 19) (15 . 20) (16 . 21)) 6.532 {1/8:10} B:1 3.00497 [ 1.24344] ((1 . 22) (2 . 26) (3 . 25) (14 . 19) (15 . 20) (16 . 21)) 7.771 {1/12:15} B:2 SIMILARITY (1/min{score1}): 0.3328 [and 1/min{score2}: 0.8042] [805, 1475]: Comparing 1ddg_A and 1fdr, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 20 (8 H + 12 S) secondary structure elements in 1fdr, of which 7 satisfy the size requirements. 2.57143 [ 1.00008] ((1 . 1) (2 . 2) (3 . 3) (13 . 4) (14 . 5) (17 . 6) (18 . 7)) 2.119 {0/20:21} B:0 4.50045 [ 1.75766] ((1 . 3) (2 . 4) (3 . 5) (4 . 6)) 10.202 {0/6:6} B:0 4.80653 [ 3.39630] ((13 . 1) (15 . 3) (16 . 4) (18 . 5)) 10.917 {2/6:6} B:0 4.80677 [ 3.39698] ((13 . 2) (14 . 3) (15 . 4) (18 . 7)) 12.076 {2/6:6} B:0 5.08026 [ 4.03632] ((1 . 1) (2 . 2) (3 . 3) (7 . 6)) 7.379 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.3889 [and 1/min{score2}: 0.9999] [805, 1633]: Comparing 1ddg_A and 1fui_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 50 (27 H + 23 S) secondary structure elements in 1fui_A, of which 17 satisfy the size requirements. 3.00013 [ 2.83349] ((1 . 28) (2 . 31) (3 . 39) (13 . 40) (14 . 42) (18 . 45)) 5.511 {0/13:15} B:0 4.50018 [ 4.25021] ((1 . 28) (2 . 31) (4 . 36) (5 . 37)) 8.076 {0/6:6} B:0 4.50038 [ 4.25045] ((3 . 31) (13 . 42) (16 . 45) (17 . 46)) 9.751 {0/6:6} B:0 4.50048 [ 4.25057] ((3 . 37) (5 . 39) (11 . 44) (12 . 46)) 10.363 {0/4:6} B:0 4.50070 [ 4.25083] ((5 . 39) (6 . 40) (11 . 44) (12 . 46)) 11.373 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.3783 [and 1/min{score2}: 0.3980] [805, 1756]: Comparing 1ddg_A and 1g7s_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 52 (18 H + 34 S) secondary structure elements in 1g7s_A, of which 11 satisfy the size requirements. 4.80624 [ 3.66658] ((13 . 22) (14 . 23) (15 . 25) (16 . 26)) 8.698 {2/6:6} B:0 5.67226 [ 5.11091] ((14 . 26) (15 . 27) (16 . 28) (18 . 30)) 9.706 {3/6:6} B:0 4.37328 [ 3.85675] ((1 . 31) (2 . 25) (14 . 26) (16 . 27) (18 . 30)) 8.289 {3/8:10} B:1 6.42699 [ 6.06528] ((1 . 29) (2 . 30) (13 . 27) (14 . 22)) 9.746 {3/5:6} B:2 SIMILARITY (1/min{score1}): 0.2287 [and 1/min{score2}: 0.2727] [805, 1758]: Comparing 1ddg_A and 1g7s_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 52 (18 H + 34 S) secondary structure elements in 1g7s_A, of which 12 satisfy the size requirements. 4.50057 [ 3.00192] ((1 . 45) (2 . 46) (3 . 49) (7 . 52)) 10.806 {0/4:6} B:0 4.52108 [ 3.06920] ((1 . 46) (2 . 49) (3 . 50) (4 . 51)) 6.020 {1/6:6} B:0 5.08043 [ 4.28500] ((13 . 41) (14 . 43) (15 . 44) (18 . 47)) 9.682 {2/5:6} B:0 5.08066 [ 4.28538] ((1 . 41) (2 . 43) (6 . 48) (8 . 51)) 11.374 {2/5:6} B:0 5.67218 [ 5.15482] ((13 . 46) (14 . 48) (16 . 50) (17 . 51)) 8.482 {3/6:6} B:0 SIMILARITY (1/min{score1}): 0.3333 [and 1/min{score2}: 0.5000] [805, 2345]: Comparing 1ddg_A and 1hze_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 9 (3 H + 6 S) secondary structure elements in 1hze_A, of which 8 satisfy the size requirements. 3.00001 [ 1.33345] ((1 . 1) (2 . 2) (3 . 4) (13 . 5) (14 . 6) (18 . 9)) 2.895 {0/14:15} B:0 4.52126 [ 2.20881] ((14 . 4) (15 . 5) (16 . 6) (17 . 7)) 8.690 {1/6:6} B:0 4.54334 [ 2.37893] ((13 . 1) (14 . 2) (17 . 3) (18 . 6)) 6.517 {1/5:6} B:0 4.54395 [ 2.38313] ((14 . 1) (15 . 2) (17 . 3) (18 . 4)) 11.364 {1/5:6} B:0 4.80615 [ 3.43674] ((1 . 1) (2 . 2) (3 . 4) (4 . 7)) 7.446 {2/6:6} B:0 SIMILARITY (1/min{score1}): 0.3478 [and 1/min{score2}: 0.7499] [805, 2424]: Comparing 1ddg_A and 1i7p_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 24 (9 H + 15 S) secondary structure elements in 1i7p_A, of which 8 satisfy the size requirements. 2.57147 [ 1.14337] ((1 . 1) (2 . 2) (3 . 3) (13 . 4) (14 . 5) (17 . 6) (18 . 7)) 3.760 {0/19:21} B:0 4.50052 [ 2.00594] ((1 . 3) (2 . 4) (3 . 5) (4 . 6)) 10.576 {0/5:6} B:0 4.50086 [ 2.00973] ((1 . 1) (2 . 2) (3 . 3) (8 . 6)) 11.973 {0/5:6} B:0 4.52162 [ 2.21192] ((13 . 4) (14 . 5) (17 . 6) (18 . 8)) 10.975 {1/6:6} B:0 5.08046 [ 4.06165] ((13 . 1) (15 . 3) (16 . 4) (18 . 5)) 9.961 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.3889 [and 1/min{score2}: 0.8746] [805, 2429]: Comparing 1ddg_A and 1i8d_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 19 (7 H + 12 S) secondary structure elements in 1i8d_A, of which 9 satisfy the size requirements. 4.50020 [ 2.25157] ((4 . 12) (5 . 13) (6 . 14) (10 . 19)) 8.282 {0/6:6} B:0 4.80660 [ 3.49574] ((13 . 10) (15 . 13) (16 . 14) (18 . 15)) 11.277 {2/6:6} B:0 4.80683 [ 3.49633] ((13 . 11) (14 . 13) (15 . 14) (18 . 18)) 12.292 {2/6:6} B:0 5.08026 [ 4.09672] ((13 . 10) (14 . 11) (17 . 12) (18 . 15)) 7.335 {2/5:6} B:0 6.98876 [ 6.68839] ((1 . 10) (2 . 11) (6 . 18) (8 . 19)) 11.198 {4/6:6} B:0 SIMILARITY (1/min{score1}): 0.2222 [and 1/min{score2}: 0.4441] [805, 2780]: Comparing 1ddg_A and 1ja1_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 45 (22 H + 23 S) secondary structure elements in 1ja1_A, of which 18 satisfy the size requirements. 1.33834 [ 1.33834] ((1 . 17) (2 . 18) (3 . 19) (4 . 20) (5 . 21) (7 . 23) (8 . 24) (9 . 25) (10 . 26) (11 . 27) (12 . 28) (13 . 29) (14 . 30) (15 . 31) (16 . 32) (17 . 33) (18 . 34)) 2.500 {13/110:136} B:0 1.50342 [ 1.50342] ((1 . 17) (2 . 18) (3 . 19) (4 . 20) (5 . 21) (7 . 23) (8 . 24) (9 . 25) (11 . 27) (12 . 28) (13 . 29) (14 . 30) (15 . 31) (16 . 32) (17 . 33) (18 . 34)) 2.283 {13/95:120} B:0 2.19262 [ 2.19262] ((1 . 17) (2 . 18) (3 . 19) (4 . 20) (6 . 21) (7 . 23) (8 . 24) (9 . 25) (10 . 26) (11 . 27) (12 . 28) (13 . 29) (14 . 30) (15 . 31) (16 . 32) (17 . 33) (18 . 34)) 2.879 {24/111:136} B:0 3.60006 [ 3.60006] ((1 . 17) (2 . 18) (3 . 19) (4 . 20) (10 . 24)) 5.196 {0/9:10} B:0 3.79332 [ 3.79332] ((1 . 17) (2 . 18) (3 . 19) (4 . 20) (11 . 25)) 6.498 {2/8:10} B:0 SIMILARITY (1/min{score1}): 0.7472 [and 1/min{score2}: 0.7472] [805, 2806]: Comparing 1ddg_A and 1jb9_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 23 (10 H + 13 S) secondary structure elements in 1jb9_A, of which 7 satisfy the size requirements. 2.57143 [ 1.00000] ((1 . 3) (2 . 4) (3 . 5) (13 . 6) (14 . 7) (17 . 9) (18 . 10)) 1.062 {0/20:21} B:0 3.00000 [ 1.16667] ((1 . 3) (2 . 4) (3 . 5) (13 . 6) (14 . 7) (18 . 10)) 1.110 {0/14:15} B:0 4.50026 [ 1.75446] ((1 . 5) (2 . 6) (3 . 7) (7 . 9)) 8.908 {0/5:6} B:0 4.50047 [ 1.75787] ((1 . 5) (2 . 6) (3 . 7) (4 . 9)) 10.270 {0/6:6} B:0 4.50080 [ 1.76342] ((1 . 3) (2 . 4) (3 . 5) (8 . 9)) 11.751 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.3889 [and 1/min{score2}: 0.9999] [805, 2901]: Comparing 1ddg_A and 1jj2_B, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 24 (7 H + 17 S) secondary structure elements in 1jj2_B, of which 18 satisfy the size requirements. 4.50010 [ 4.50010] ((1 . 11) (3 . 15) (13 . 23) (15 . 24)) 6.996 {0/1:6} B:0 4.50050 [ 4.50050] ((3 . 9) (7 . 12) (13 . 20) (16 . 22)) 10.445 {0/5:6} B:0 4.50064 [ 4.50064] ((1 . 9) (2 . 11) (7 . 17) (8 . 18)) 11.132 {0/4:6} B:0 4.50118 [ 4.50118] ((1 . 5) (2 . 6) (5 . 9) (6 . 11)) 12.966 {0/5:6} B:0 4.50126 [ 4.50126] ((2 . 2) (8 . 7) (17 . 12) (18 . 15)) 13.170 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.3886 [and 1/min{score2}: 0.3886] [805, 3329]: Comparing 1ddg_A and 1kk1_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 34 (9 H + 25 S) secondary structure elements in 1kk1_A, of which 10 satisfy the size requirements. 2.57168 [ 1.43003] ((1 . 16) (2 . 17) (3 . 19) (13 . 21) (14 . 24) (17 . 25) (18 . 26)) 5.780 {0/17:21} B:0 4.50056 [ 2.50324] ((1 . 19) (2 . 21) (3 . 24) (4 . 25)) 10.738 {0/5:6} B:0 4.50068 [ 2.50396] ((1 . 16) (2 . 17) (3 . 19) (8 . 25)) 11.296 {0/4:6} B:0 4.50072 [ 2.50422] ((13 . 21) (16 . 24) (17 . 25) (18 . 26)) 11.472 {0/5:6} B:0 4.80627 [ 3.57103] ((13 . 21) (14 . 22) (17 . 25) (18 . 26)) 9.028 {2/6:6} B:0 SIMILARITY (1/min{score1}): 0.3889 [and 1/min{score2}: 0.6993] [805, 3409]: Comparing 1ddg_A and 1krh_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 30 (11 H + 19 S) secondary structure elements in 1krh_A, of which 7 satisfy the size requirements. 2.57143 [ 1.00009] ((1 . 12) (2 . 13) (3 . 14) (13 . 15) (14 . 16) (17 . 17) (18 . 18)) 2.219 {0/20:21} B:0 3.00000 [ 1.16671] ((1 . 12) (2 . 13) (3 . 14) (13 . 15) (14 . 16) (18 . 18)) 2.051 {0/14:15} B:0 4.50032 [ 1.75547] ((1 . 14) (2 . 15) (3 . 16) (4 . 17)) 9.373 {0/6:6} B:0 4.52146 [ 2.03813] ((14 . 15) (15 . 16) (17 . 17) (18 . 18)) 10.130 {1/6:6} B:0 5.08027 [ 4.03632] ((1 . 12) (2 . 13) (3 . 14) (7 . 17)) 7.449 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.3889 [and 1/min{score2}: 0.9999] [805, 3487]: Comparing 1ddg_A and 1kzl_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 19 (7 H + 12 S) secondary structure elements in 1kzl_A, of which 7 satisfy the size requirements. 3.00001 [ 1.16675] ((1 . 1) (2 . 2) (3 . 4) (13 . 5) (14 . 6) (18 . 9)) 2.459 {0/14:15} B:0 4.52135 [ 2.03699] ((13 . 4) (14 . 5) (15 . 6) (17 . 7)) 9.453 {1/6:6} B:0 4.52136 [ 2.03704] ((1 . 4) (2 . 5) (3 . 6) (4 . 7)) 9.487 {1/6:6} B:0 4.80617 [ 3.39528] ((1 . 1) (2 . 2) (3 . 4) (4 . 7)) 7.853 {2/6:6} B:0 4.80651 [ 3.39625] ((14 . 5) (15 . 6) (17 . 7) (18 . 9)) 10.827 {2/6:6} B:0 SIMILARITY (1/min{score1}): 0.3333 [and 1/min{score2}: 0.8571] [805, 3488]: Comparing 1ddg_A and 1kzl_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 19 (7 H + 12 S) secondary structure elements in 1kzl_A, of which 9 satisfy the size requirements. 4.52122 [ 2.40431] ((4 . 12) (5 . 13) (6 . 14) (10 . 19)) 8.281 {1/6:6} B:0 4.54355 [ 2.54171] ((13 . 13) (14 . 14) (15 . 15) (17 . 16)) 9.135 {1/5:6} B:0 4.60362 [ 2.83639] ((13 . 10) (14 . 11) (17 . 12) (18 . 15)) 6.804 {1/4:6} B:0 4.80621 [ 3.49474] ((1 . 13) (2 . 14) (3 . 15) (4 . 19)) 8.423 {2/6:6} B:0 4.80645 [ 3.49537] ((14 . 14) (15 . 15) (17 . 16) (18 . 18)) 10.472 {2/6:6} B:0 SIMILARITY (1/min{score1}): 0.3937 [and 1/min{score2}: 0.4881] [805, 4017]: Comparing 1ddg_A and 1mrz_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 24 (11 H + 13 S) secondary structure elements in 1mrz_A, of which 6 satisfy the size requirements. 4.50041 [ 1.51088] ((3 . 17) (5 . 19) (6 . 21) (12 . 24)) 9.931 {0/5:6} B:0 4.52141 [ 1.89605] ((1 . 21) (2 . 22) (3 . 23) (4 . 24)) 9.881 {1/6:6} B:0 4.80681 [ 3.36923] ((13 . 17) (15 . 19) (16 . 21) (18 . 22)) 12.236 {2/6:6} B:0 SIMILARITY (1/min{score1}): 0.2222 [and 1/min{score2}: 0.6619] [805, 4087]: Comparing 1ddg_A and 1n08_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 11 (5 H + 6 S) secondary structure elements in 1n08_A, of which 10 satisfy the size requirements. 4.50009 [ 2.50055] ((4 . 4) (5 . 5) (6 . 6) (12 . 10)) 6.885 {0/6:6} B:0 4.50035 [ 2.50206] ((4 . 4) (5 . 5) (6 . 6) (12 . 9)) 9.586 {0/6:6} B:0 4.80697 [ 3.57274] ((13 . 1) (15 . 5) (16 . 6) (18 . 7)) 12.826 {2/6:6} B:0 5.67234 [ 5.07673] ((5 . 1) (7 . 2) (8 . 4) (17 . 9)) 10.624 {2/4:6} B:0 2.57335 [ 1.43968] ((1 . 6) (2 . 7) (3 . 8) (7 . 10) (13 . 1) (14 . 3) (18 . 5)) 6.957 {1/18:21} B:1 SIMILARITY (1/min{score1}): 0.3886 [and 1/min{score2}: 0.6946] [805, 4090]: Comparing 1ddg_A and 1n0u_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 65 (32 H + 33 S) secondary structure elements in 1n0u_A, of which 12 satisfy the size requirements. 4.52143 [ 3.07033] ((11 . 28) (13 . 30) (14 . 32) (18 . 35)) 9.965 {1/6:6} B:0 4.52199 [ 3.07212] ((2 . 30) (3 . 32) (5 . 34) (6 . 35)) 12.382 {1/6:6} B:0 4.60364 [ 3.31045] ((11 . 28) (15 . 32) (16 . 33) (18 . 35)) 7.075 {1/4:6} B:0 4.80620 [ 3.78171] ((4 . 27) (7 . 28) (14 . 37) (16 . 38)) 8.248 {2/6:6} B:0 4.80677 [ 3.78288] ((9 . 27) (13 . 30) (14 . 32) (15 . 34)) 12.068 {2/6:6} B:0 SIMILARITY (1/min{score1}): 0.2212 [and 1/min{score2}: 0.3257] [805, 5312]: Comparing 1ddg_A and 1qfj_A, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 20 (8 H + 12 S) secondary structure elements in 1qfj_A, of which 7 satisfy the size requirements. 2.57143 [ 1.00010] ((1 . 1) (2 . 2) (3 . 3) (13 . 4) (14 . 5) (17 . 6) (18 . 7)) 2.245 {0/20:21} B:0 4.50031 [ 1.75527] ((1 . 3) (2 . 4) (3 . 5) (4 . 6)) 9.286 {0/6:6} B:0 4.80650 [ 3.39621] ((13 . 1) (15 . 3) (16 . 4) (18 . 5)) 10.741 {2/6:6} B:0 5.08025 [ 4.03630] ((1 . 1) (2 . 2) (3 . 3) (7 . 6)) 7.166 {2/5:6} B:0 5.67223 [ 5.01888] ((13 . 2) (14 . 4) (17 . 6) (18 . 7)) 9.285 {3/6:6} B:0 SIMILARITY (1/min{score1}): 0.3889 [and 1/min{score2}: 0.9999] [805, 6507]: Comparing 1ddg_A and 2pia, based on their crossing files. There are 30 (15 H + 15 S) secondary structure elements in 1ddg_A, of which 18 satisfy the size requirements. There are 26 (7 H + 19 S) secondary structure elements in 2pia, of which 8 satisfy the size requirements. 2.57146 [ 1.14317] ((1 . 1) (2 . 3) (3 . 4) (13 . 5) (14 . 6) (17 . 7) (18 . 8)) 3.314 {0/20:21} B:0 4.50040 [ 2.00452] ((1 . 4) (2 . 5) (3 . 6) (4 . 7)) 9.877 {0/6:6} B:0 4.54361 [ 2.38079] ((13 . 3) (15 . 6) (17 . 7) (18 . 8)) 9.576 {1/5:6} B:0 4.80629 [ 3.43713] ((13 . 3) (14 . 4) (17 . 7) (18 . 8)) 9.230 {2/6:6} B:0 5.08026 [ 4.06125] ((1 . 1) (2 . 3) (3 . 4) (7 . 7)) 7.272 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.3889 [and 1/min{score2}: 0.8748] -------------------------------------------------------------------------------------------------------------------------