------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [1979, 64]: Comparing 1gvz_A and 1a7s, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 16 (3 H + 13 S) secondary structure elements in 1a7s, of which 13 satisfy the size requirements. 1.30790 [ 1.00046] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (8 . 7) (10 . 8) (11 . 9) (13 . 10) (16 . 12) (19 . 13) (20 . 14) (22 . 15) (23 . 16)) 3.053 {1/66:78} B:0 1.30792 [ 1.00051] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (10 . 8) (11 . 9) (13 . 10) (16 . 12) (19 . 13) (20 . 14) (22 . 15) (23 . 16)) 3.165 {1/66:78} B:0 1.41681 [ 1.08365] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (10 . 8) (11 . 9) (13 . 10) (16 . 12) (19 . 13) (20 . 14) (23 . 16)) 3.202 {0/55:66} B:0 2.83336 [ 2.16672] ((11 . 2) (13 . 3) (16 . 4) (19 . 6) (20 . 7) (22 . 8)) 3.402 {0/13:15} B:0 2.83336 [ 2.16673] ((2 . 9) (3 . 10) (4 . 12) (6 . 13) (8 . 14) (10 . 15)) 3.632 {0/12:15} B:0 SIMILARITY (1/min{score1}): 0.7646 [and 1/min{score2}: 0.9995] [1979, 123]: Comparing 1gvz_A and 1agj_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 26 (10 H + 16 S) secondary structure elements in 1agj_A, of which 18 satisfy the size requirements. 1.21463 [ 1.28600] ((2 . 6) (3 . 7) (4 . 8) (6 . 11) (8 . 14) (10 . 15) (11 . 18) (13 . 19) (16 . 21) (18 . 22) (19 . 23) (20 . 24) (22 . 25) (23 . 26)) 3.555 {0/76:91} B:0 1.21485 [ 1.28619] ((2 . 6) (3 . 7) (4 . 8) (6 . 11) (7 . 14) (10 . 15) (11 . 18) (13 . 19) (16 . 21) (18 . 22) (19 . 23) (20 . 24) (22 . 25) (23 . 26)) 4.043 {0/76:91} B:0 2.42907 [ 2.57185] ((2 . 6) (3 . 7) (4 . 8) (6 . 11) (8 . 14) (10 . 15) (18 . 26)) 6.585 {0/15:21} B:0 2.43028 [ 2.57287] ((11 . 6) (13 . 7) (16 . 8) (18 . 9) (19 . 11) (20 . 14) (22 . 15)) 3.750 {1/18:21} B:0 2.83720 [ 3.00326] ((11 . 6) (13 . 7) (18 . 9) (19 . 11) (20 . 14) (22 . 15)) 3.548 {1/13:15} B:0 SIMILARITY (1/min{score1}): 0.8233 [and 1/min{score2}: 0.7776] [1979, 192]: Comparing 1gvz_A and 1arb, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 30 (11 H + 19 S) secondary structure elements in 1arb, of which 18 satisfy the size requirements. 1.21459 [ 1.28597] ((2 . 4) (3 . 5) (4 . 6) (6 . 9) (7 . 11) (8 . 12) (10 . 13) (11 . 17) (13 . 19) (16 . 21) (19 . 22) (20 . 23) (22 . 25) (23 . 26)) 3.444 {0/73:91} B:0 1.30784 [ 1.38474] ((2 . 4) (3 . 5) (4 . 6) (6 . 9) (7 . 11) (8 . 12) (10 . 13) (11 . 17) (13 . 19) (16 . 21) (19 . 22) (20 . 23) (22 . 25)) 3.031 {0/64:78} B:0 1.30795 [ 1.38483] ((2 . 4) (3 . 5) (4 . 6) (6 . 9) (8 . 12) (10 . 13) (11 . 17) (13 . 19) (16 . 21) (19 . 22) (20 . 23) (22 . 25) (23 . 26)) 3.500 {0/63:78} B:0 1.66397 [ 1.70332] ((2 . 4) (3 . 5) (4 . 6) (6 . 11) (8 . 12) (10 . 13) (11 . 17) (13 . 19) (16 . 21) (19 . 22) (20 . 23) (22 . 25) (23 . 26)) 3.864 {9/61:78} B:0 2.42865 [ 2.57150] ((11 . 4) (13 . 5) (16 . 6) (18 . 8) (19 . 9) (20 . 11) (22 . 13)) 4.180 {0/17:21} B:0 SIMILARITY (1/min{score1}): 0.8233 [and 1/min{score2}: 0.7776] [1979, 212]: Comparing 1gvz_A and 1aut_C, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 17 (4 H + 13 S) secondary structure elements in 1aut_C, of which 15 satisfy the size requirements. 1.30794 [ 1.15421] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (8 . 7) (10 . 8) (11 . 10) (13 . 11) (16 . 13) (19 . 14) (20 . 15) (22 . 16) (23 . 17)) 3.252 {1/66:78} B:0 1.30809 [ 1.15442] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (10 . 8) (11 . 10) (13 . 11) (16 . 13) (19 . 14) (20 . 15) (22 . 16) (23 . 17)) 3.732 {1/65:78} B:0 2.83337 [ 2.50005] ((11 . 2) (13 . 3) (16 . 4) (19 . 6) (20 . 7) (22 . 8)) 3.770 {0/13:15} B:0 3.40001 [ 3.00002] ((13 . 3) (16 . 4) (19 . 6) (20 . 7) (22 . 8)) 3.491 {0/9:10} B:0 3.40014 [ 3.00020] ((2 . 3) (3 . 4) (4 . 6) (6 . 7) (13 . 13)) 6.123 {0/9:10} B:0 SIMILARITY (1/min{score1}): 0.7646 [and 1/min{score2}: 0.8664] [1979, 255]: Comparing 1gvz_A and 1azz_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 18 (3 H + 15 S) secondary structure elements in 1azz_A, of which 16 satisfy the size requirements. 1.21521 [ 1.14397] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (10 . 9) (11 . 10) (13 . 12) (16 . 14) (19 . 15) (20 . 16) (22 . 17) (23 . 18)) 3.423 {2/77:91} B:0 1.30787 [ 1.23099] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (10 . 9) (11 . 10) (16 . 14) (19 . 15) (20 . 16) (22 . 17) (23 . 18)) 2.885 {1/65:78} B:0 2.83337 [ 2.66671] ((11 . 2) (13 . 3) (16 . 4) (19 . 6) (20 . 7) (22 . 9)) 3.733 {0/12:15} B:0 2.83339 [ 2.66673] ((2 . 10) (3 . 12) (4 . 14) (6 . 15) (8 . 16) (10 . 17)) 4.211 {0/12:15} B:0 2.83347 [ 2.66683] ((2 . 10) (3 . 12) (4 . 14) (6 . 15) (7 . 16) (10 . 17)) 5.315 {0/12:15} B:0 SIMILARITY (1/min{score1}): 0.8229 [and 1/min{score2}: 0.8741] [1979, 407]: Comparing 1gvz_A and 1bio, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 17 (3 H + 14 S) secondary structure elements in 1bio, of which 16 satisfy the size requirements. 1.21431 [ 1.14289] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (10 . 9) (11 . 10) (13 . 11) (16 . 13) (19 . 14) (20 . 15) (22 . 16) (23 . 17)) 1.853 {0/78:91} B:0 1.30771 [ 1.23079] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (10 . 9) (11 . 10) (13 . 11) (16 . 13) (19 . 14) (20 . 15) (23 . 17)) 1.712 {0/66:78} B:0 2.83335 [ 2.66668] ((2 . 10) (3 . 11) (4 . 13) (6 . 14) (7 . 15) (10 . 16)) 2.944 {0/12:15} B:0 3.40025 [ 3.20030] ((2 . 3) (3 . 4) (4 . 6) (13 . 13) (20 . 16)) 7.142 {0/8:10} B:0 3.40043 [ 3.20051] ((3 . 2) (4 . 3) (6 . 4) (8 . 6) (10 . 8)) 8.140 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.8235 [and 1/min{score2}: 0.8750] [1979, 587]: Comparing 1gvz_A and 1cgh_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 17 (3 H + 14 S) secondary structure elements in 1cgh_A, of which 15 satisfy the size requirements. 1.21437 [ 1.07155] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (10 . 9) (11 . 10) (13 . 11) (16 . 13) (19 . 14) (20 . 15) (22 . 16) (23 . 17)) 2.499 {0/78:91} B:0 2.83336 [ 2.50004] ((11 . 2) (13 . 3) (16 . 4) (19 . 6) (20 . 7) (22 . 9)) 3.499 {0/13:15} B:0 2.83340 [ 2.50009] ((2 . 10) (3 . 11) (4 . 13) (6 . 14) (7 . 15) (10 . 16)) 4.436 {0/12:15} B:0 2.83341 [ 2.50012] ((6 . 3) (10 . 9) (11 . 10) (13 . 11) (16 . 13) (23 . 17)) 4.683 {0/14:15} B:0 2.83351 [ 2.50026] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 8) (23 . 17)) 5.732 {0/13:15} B:0 SIMILARITY (1/min{score1}): 0.8235 [and 1/min{score2}: 0.9332] [1979, 655]: Comparing 1gvz_A and 1cqq_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 19 (4 H + 15 S) secondary structure elements in 1cqq_A, of which 16 satisfy the size requirements. 1.30907 [ 1.23242] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (10 . 9) (11 . 11) (13 . 12) (16 . 15) (19 . 16) (20 . 17) (22 . 18)) 3.682 {2/64:78} B:0 1.41687 [ 1.33358] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (8 . 8) (10 . 9) (11 . 11) (13 . 12) (16 . 15) (19 . 16) (20 . 17) (22 . 18)) 3.524 {0/54:66} B:0 1.41739 [ 1.33420] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (8 . 7) (10 . 9) (11 . 11) (13 . 12) (16 . 15) (19 . 16) (20 . 17) (22 . 18)) 4.813 {0/55:66} B:0 1.41856 [ 1.33561] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (10 . 9) (11 . 11) (13 . 12) (16 . 15) (19 . 16) (20 . 17)) 3.680 {2/54:66} B:0 1.54585 [ 1.45502] ((2 . 2) (3 . 3) (4 . 4) (8 . 7) (10 . 9) (11 . 11) (13 . 12) (16 . 15) (19 . 16) (20 . 17) (22 . 18)) 4.418 {0/45:55} B:0 SIMILARITY (1/min{score1}): 0.7639 [and 1/min{score2}: 0.8114] [1979, 819]: Comparing 1gvz_A and 1df9_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 11 (3 H + 8 S) secondary structure elements in 1df9_A, of which 9 satisfy the size requirements. 3.71256 [ 3.54495] ((3 . 2) (4 . 3) (13 . 5) (19 . 8) (20 . 9) (22 . 10) (23 . 11)) 5.803 {6/17:21} B:0 4.25009 [ 2.25058] ((3 . 2) (4 . 3) (11 . 9) (13 . 10)) 6.440 {0/3:6} B:0 4.30146 [ 2.54147] ((8 . 2) (16 . 8) (19 . 9) (20 . 10)) 8.777 {1/5:6} B:0 4.30156 [ 2.54198] ((6 . 2) (7 . 3) (13 . 8) (18 . 11)) 9.497 {1/5:6} B:0 5.55385 [ 5.05083] ((6 . 2) (7 . 3) (16 . 10) (18 . 11)) 10.404 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.2694 [and 1/min{score2}: 0.4443] [1979, 872]: Comparing 1gvz_A and 1dle_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 23 (11 H + 12 S) secondary structure elements in 1dle_A, of which 19 satisfy the size requirements. 1.21512 [ 1.35774] ((2 . 3) (3 . 4) (4 . 5) (6 . 7) (8 . 8) (10 . 10) (11 . 13) (13 . 14) (16 . 17) (18 . 18) (19 . 19) (20 . 20) (22 . 22) (23 . 23)) 2.560 {2/74:91} B:0 2.42861 [ 2.71431] ((2 . 3) (3 . 4) (4 . 5) (6 . 7) (10 . 10) (13 . 14) (22 . 19)) 3.366 {0/16:21} B:0 2.42861 [ 2.71431] ((2 . 3) (3 . 4) (4 . 5) (8 . 8) (10 . 10) (13 . 14) (22 . 19)) 3.457 {0/16:21} B:0 2.83340 [ 3.16671] ((11 . 3) (13 . 4) (16 . 5) (19 . 7) (20 . 8) (22 . 10)) 4.379 {0/12:15} B:0 3.18973 [ 3.43751] ((6 . 7) (10 . 10) (11 . 13) (13 . 14) (19 . 17) (23 . 23)) 5.138 {3/12:15} B:0 SIMILARITY (1/min{score1}): 0.8230 [and 1/min{score2}: 0.7365] [1979, 1209]: Comparing 1gvz_A and 1elv_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 25 (5 H + 20 S) secondary structure elements in 1elv_A, of which 14 satisfy the size requirements. 1.41682 [ 1.16694] ((2 . 9) (3 . 10) (4 . 11) (8 . 15) (10 . 16) (11 . 18) (13 . 19) (16 . 21) (19 . 22) (20 . 23) (22 . 24) (23 . 25)) 2.647 {1/56:66} B:0 2.83336 [ 2.33338] ((2 . 18) (3 . 19) (4 . 21) (6 . 22) (7 . 23) (10 . 24)) 3.520 {0/12:15} B:0 3.40004 [ 2.80008] ((6 . 10) (8 . 15) (10 . 16) (13 . 19) (23 . 25)) 4.622 {0/7:10} B:0 3.40007 [ 2.80013] ((11 . 9) (13 . 10) (16 . 11) (20 . 15) (22 . 16)) 5.208 {0/8:10} B:0 3.40038 [ 2.80067] ((2 . 10) (3 . 11) (6 . 15) (11 . 19) (13 . 21)) 7.887 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.7058 [and 1/min{score2}: 0.8569] [1979, 1244]: Comparing 1gvz_A and 1eq9_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 18 (4 H + 14 S) secondary structure elements in 1eq9_A, of which 15 satisfy the size requirements. 1.30791 [ 1.15416] ((2 . 2) (3 . 3) (4 . 4) (6 . 7) (8 . 8) (10 . 9) (11 . 11) (13 . 12) (16 . 14) (19 . 15) (20 . 16) (22 . 17) (23 . 18)) 3.102 {1/67:78} B:0 1.30799 [ 1.15427] ((2 . 2) (3 . 3) (4 . 4) (6 . 7) (7 . 8) (10 . 9) (11 . 11) (13 . 12) (16 . 14) (19 . 15) (20 . 16) (22 . 17) (23 . 18)) 3.435 {1/67:78} B:0 2.83335 [ 2.50003] ((11 . 2) (13 . 3) (16 . 4) (19 . 7) (20 . 8) (22 . 9)) 3.358 {0/13:15} B:0 2.83337 [ 2.50005] ((2 . 11) (3 . 12) (4 . 14) (6 . 15) (8 . 16) (10 . 17)) 3.766 {0/12:15} B:0 3.40001 [ 3.00001] ((13 . 3) (16 . 4) (19 . 7) (20 . 8) (22 . 9)) 3.171 {0/9:10} B:0 SIMILARITY (1/min{score1}): 0.7646 [and 1/min{score2}: 0.8664] [1979, 1536]: Comparing 1gvz_A and 1fjs_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 18 (4 H + 14 S) secondary structure elements in 1fjs_A, of which 17 satisfy the size requirements. 1.21444 [ 1.21444] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (10 . 9) (11 . 11) (13 . 12) (16 . 14) (19 . 15) (20 . 16) (22 . 17) (23 . 18)) 2.670 {1/76:91} B:0 1.30783 [ 1.30783] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (8 . 8) (10 . 9) (11 . 11) (13 . 12) (16 . 14) (19 . 15) (20 . 16) (22 . 17) (23 . 18)) 2.594 {1/65:78} B:0 1.30784 [ 1.30784] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (10 . 9) (11 . 11) (16 . 14) (19 . 15) (20 . 16) (22 . 17) (23 . 18)) 2.627 {1/65:78} B:0 2.83336 [ 2.83336] ((11 . 2) (13 . 3) (16 . 4) (19 . 6) (20 . 7) (22 . 9)) 3.515 {0/13:15} B:0 3.40001 [ 3.40001] ((13 . 3) (16 . 4) (19 . 6) (20 . 7) (22 . 9)) 3.173 {0/9:10} B:0 SIMILARITY (1/min{score1}): 0.8687 [and 1/min{score2}: 0.8687] [1979, 1805]: Comparing 1gvz_A and 1gdn_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 18 (4 H + 14 S) secondary structure elements in 1gdn_A, of which 16 satisfy the size requirements. 1.21436 [ 1.14295] ((2 . 2) (3 . 3) (4 . 4) (6 . 7) (7 . 8) (8 . 9) (10 . 10) (11 . 11) (13 . 12) (16 . 14) (19 . 15) (20 . 16) (22 . 17) (23 . 18)) 2.424 {0/76:91} B:0 1.30775 [ 1.23083] ((2 . 2) (3 . 3) (4 . 4) (6 . 7) (7 . 8) (8 . 9) (10 . 10) (11 . 11) (13 . 12) (16 . 14) (19 . 15) (20 . 16) (23 . 18)) 2.359 {0/64:78} B:0 2.83335 [ 2.66669] ((11 . 2) (13 . 3) (16 . 4) (19 . 7) (20 . 8) (22 . 10)) 3.317 {0/12:15} B:0 2.83336 [ 2.66670] ((2 . 11) (3 . 12) (4 . 14) (6 . 15) (8 . 16) (10 . 17)) 3.489 {0/12:15} B:0 2.83338 [ 2.66673] ((6 . 3) (10 . 10) (11 . 11) (13 . 12) (16 . 14) (23 . 18)) 4.143 {0/14:15} B:0 SIMILARITY (1/min{score1}): 0.8235 [and 1/min{score2}: 0.8749] [1979, 1974]: Comparing 1gvz_A and 1gvk_B, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 20 (6 H + 14 S) secondary structure elements in 1gvk_B, of which 14 satisfy the size requirements. 1.30806 [ 1.07757] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (8 . 7) (10 . 9) (11 . 10) (13 . 11) (16 . 15) (19 . 16) (20 . 17) (22 . 18) (23 . 20)) 3.646 {1/65:78} B:0 1.30816 [ 1.07777] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (10 . 9) (11 . 10) (13 . 11) (16 . 15) (19 . 16) (20 . 17) (22 . 18) (23 . 20)) 3.936 {1/65:78} B:0 1.41687 [ 1.16703] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (10 . 9) (11 . 10) (13 . 11) (16 . 15) (19 . 16) (20 . 17) (22 . 18) (23 . 20)) 3.002 {1/55:66} B:0 2.83336 [ 2.33338] ((11 . 2) (13 . 3) (16 . 4) (19 . 6) (20 . 7) (22 . 9)) 3.435 {0/13:15} B:0 3.40002 [ 2.80003] ((13 . 3) (16 . 4) (19 . 6) (20 . 7) (22 . 9)) 3.663 {0/9:10} B:0 SIMILARITY (1/min{score1}): 0.7645 [and 1/min{score2}: 0.9280] [1979, 1979]: Comparing 1gvz_A and 1gvz_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. 1.00000 [ 1.00000] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (16 . 16) (18 . 18) (19 . 19) (20 . 20) (22 . 22) (23 . 23)) 0.000 {0/118:136} B:0 3.10385 [ 3.10385] ((6 . 4) (9 . 9) (10 . 10) (16 . 16) (18 . 18) (23 . 23)) 4.506 {3/13:15} B:0 3.41017 [ 3.41017] ((16 . 2) (19 . 3) (20 . 4) (22 . 6) (23 . 9)) 8.547 {1/9:10} B:0 3.41017 [ 3.41017] ((2 . 16) (3 . 19) (4 . 20) (6 . 22) (9 . 23)) 8.547 {1/9:10} B:0 4.25008 [ 4.25008] ((11 . 4) (16 . 8) (18 . 9) (19 . 10)) 6.314 {0/4:6} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [1979, 2154]: Comparing 1gvz_A and 1hav_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 25 (8 H + 17 S) secondary structure elements in 1hav_A, of which 21 satisfy the size requirements. 1.21558 [ 1.50069] ((2 . 2) (3 . 4) (4 . 5) (6 . 8) (7 . 9) (8 . 11) (10 . 12) (11 . 15) (13 . 16) (16 . 20) (19 . 21) (20 . 23) (22 . 24) (23 . 25)) 4.076 {2/75:91} B:0 2.42869 [ 3.00006] ((2 . 2) (3 . 3) (6 . 8) (7 . 9) (8 . 11) (10 . 12) (23 . 25)) 4.570 {0/16:21} B:0 2.43126 [ 3.00143] ((2 . 2) (3 . 3) (4 . 5) (6 . 8) (7 . 9) (8 . 11) (13 . 19)) 6.894 {1/17:21} B:0 2.43173 [ 3.00168] ((2 . 2) (4 . 5) (6 . 8) (7 . 9) (8 . 11) (13 . 19) (20 . 23)) 6.575 {1/16:21} B:0 2.83343 [ 3.50005] ((11 . 2) (13 . 3) (16 . 5) (19 . 8) (20 . 9) (22 . 12)) 4.903 {0/13:15} B:0 SIMILARITY (1/min{score1}): 0.8227 [and 1/min{score2}: 0.6664] [1979, 3345]: Comparing 1gvz_A and 1kli_H, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 20 (5 H + 15 S) secondary structure elements in 1kli_H, of which 18 satisfy the size requirements. 1.21447 [ 1.28587] ((2 . 2) (3 . 3) (4 . 4) (6 . 7) (7 . 8) (8 . 9) (10 . 10) (11 . 12) (13 . 13) (16 . 15) (19 . 16) (20 . 17) (22 . 18) (23 . 19)) 2.873 {1/76:91} B:0 1.76175 [ 1.80726] ((2 . 2) (3 . 3) (4 . 4) (6 . 7) (7 . 8) (8 . 9) (10 . 10) (11 . 12) (16 . 13) (19 . 16) (20 . 17) (23 . 19)) 3.874 {8/52:66} B:0 2.83335 [ 3.00001] ((11 . 2) (13 . 3) (16 . 4) (19 . 7) (20 . 8) (22 . 10)) 3.103 {0/13:15} B:0 3.40001 [ 3.60001] ((13 . 3) (16 . 4) (19 . 7) (20 . 8) (22 . 10)) 2.899 {0/9:10} B:0 3.40995 [ 3.60839] ((3 . 2) (4 . 3) (6 . 4) (8 . 7) (19 . 15)) 7.437 {1/9:10} B:0 SIMILARITY (1/min{score1}): 0.8234 [and 1/min{score2}: 0.7777] [1979, 3475]: Comparing 1gvz_A and 1ky9_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 22 (6 H + 16 S) secondary structure elements in 1ky9_A, of which 15 satisfy the size requirements. 1.30942 [ 1.15636] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (8 . 7) (10 . 8) (11 . 10) (13 . 11) (16 . 12) (19 . 13) (20 . 14) (22 . 15) (23 . 16)) 4.548 {2/65:78} B:0 1.30972 [ 1.15679] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (10 . 8) (11 . 10) (13 . 11) (16 . 12) (19 . 13) (20 . 14) (22 . 15) (23 . 16)) 4.875 {2/64:78} B:0 1.97749 [ 1.93916] ((2 . 2) (3 . 3) (4 . 4) (7 . 6) (8 . 7) (10 . 8) (11 . 10) (13 . 11) (16 . 12) (19 . 13) (20 . 14) (22 . 15) (23 . 16)) 4.769 {12/64:78} B:0 2.43040 [ 2.14552] ((11 . 2) (13 . 3) (16 . 4) (18 . 5) (19 . 6) (20 . 7) (22 . 8)) 5.028 {1/18:21} B:0 2.83336 [ 2.50004] ((2 . 10) (3 . 11) (4 . 12) (6 . 13) (8 . 14) (10 . 15)) 3.604 {0/12:15} B:0 SIMILARITY (1/min{score1}): 0.7637 [and 1/min{score2}: 0.8648] [1979, 3513]: Comparing 1gvz_A and 1l1j_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 21 (6 H + 15 S) secondary structure elements in 1l1j_A, of which 18 satisfy the size requirements. 1.21789 [ 1.28875] ((2 . 2) (3 . 5) (4 . 6) (6 . 8) (7 . 9) (8 . 10) (10 . 11) (11 . 14) (13 . 15) (16 . 17) (19 . 18) (20 . 19) (22 . 20) (23 . 21)) 3.228 {3/76:91} B:0 1.30783 [ 1.38473] ((2 . 2) (3 . 5) (4 . 6) (6 . 8) (7 . 9) (8 . 10) (10 . 11) (11 . 14) (13 . 15) (19 . 18) (20 . 19) (22 . 20) (23 . 21)) 2.567 {1/65:78} B:0 1.31324 [ 1.38929] ((2 . 2) (3 . 5) (4 . 6) (6 . 8) (7 . 9) (8 . 10) (10 . 11) (11 . 14) (13 . 15) (16 . 17) (19 . 18) (20 . 19) (23 . 21)) 3.222 {3/64:78} B:0 2.83339 [ 3.00005] ((11 . 2) (13 . 5) (16 . 6) (19 . 8) (20 . 9) (22 . 11)) 4.273 {0/14:15} B:0 2.83356 [ 3.00019] ((2 . 2) (6 . 5) (7 . 6) (10 . 11) (11 . 14) (23 . 21)) 6.030 {0/11:15} B:0 SIMILARITY (1/min{score1}): 0.8211 [and 1/min{score2}: 0.7759] [1979, 3597]: Comparing 1gvz_A and 1lcy_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 28 (8 H + 20 S) secondary structure elements in 1lcy_A, of which 15 satisfy the size requirements. 1.30873 [ 1.15536] ((2 . 3) (3 . 4) (4 . 5) (6 . 7) (8 . 8) (10 . 9) (11 . 11) (13 . 12) (16 . 13) (19 . 14) (20 . 15) (22 . 16) (23 . 17)) 4.895 {1/65:78} B:0 1.95311 [ 1.91326] ((2 . 3) (3 . 4) (4 . 5) (7 . 7) (8 . 8) (10 . 9) (11 . 11) (13 . 12) (16 . 13) (19 . 14) (20 . 15) (22 . 16) (23 . 17)) 5.165 {12/65:78} B:0 2.42950 [ 2.14422] ((2 . 3) (3 . 4) (4 . 5) (6 . 7) (8 . 8) (10 . 9) (18 . 17)) 7.695 {0/16:21} B:0 2.83341 [ 2.50011] ((11 . 3) (13 . 4) (16 . 5) (19 . 7) (20 . 8) (22 . 9)) 4.584 {0/12:15} B:0 3.40008 [ 3.00011] ((2 . 3) (3 . 4) (4 . 5) (6 . 7) (7 . 8)) 5.334 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.7641 [and 1/min{score2}: 0.8655] [1979, 3752]: Comparing 1gvz_A and 1lvm_B, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 24 (6 H + 18 S) secondary structure elements in 1lvm_B, of which 19 satisfy the size requirements. 1.30918 [ 1.46260] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 9) (10 . 10) (11 . 11) (16 . 16) (19 . 17) (20 . 18) (22 . 19) (23 . 20)) 3.794 {2/63:78} B:0 2.08581 [ 2.12956] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 9) (10 . 10) (13 . 11) (16 . 16) (19 . 17) (20 . 18) (22 . 19) (23 . 20)) 3.858 {13/65:78} B:0 2.58353 [ 2.82890] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 9) (20 . 22)) 8.128 {3/17:21} B:0 3.40027 [ 3.80019] ((3 . 2) (4 . 3) (6 . 4) (8 . 6) (13 . 16)) 7.230 {0/8:10} B:0 3.41608 [ 3.81155] ((8 . 6) (10 . 9) (12 . 13) (19 . 18) (20 . 19)) 9.098 {1/8:10} B:0 SIMILARITY (1/min{score1}): 0.7638 [and 1/min{score2}: 0.6977] [1979, 3893]: Comparing 1gvz_A and 1m9u_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 17 (4 H + 13 S) secondary structure elements in 1m9u_A, of which 15 satisfy the size requirements. 1.30796 [ 1.15424] ((2 . 2) (3 . 3) (4 . 4) (6 . 7) (8 . 8) (10 . 9) (11 . 10) (13 . 11) (16 . 13) (19 . 14) (20 . 15) (22 . 16) (23 . 17)) 3.313 {1/65:78} B:0 1.30804 [ 1.15435] ((2 . 2) (3 . 3) (4 . 4) (6 . 7) (7 . 8) (10 . 9) (11 . 10) (13 . 11) (16 . 13) (19 . 14) (20 . 15) (22 . 16) (23 . 17)) 3.582 {1/65:78} B:0 1.41682 [ 1.25022] ((2 . 2) (3 . 3) (4 . 4) (6 . 7) (10 . 9) (11 . 10) (13 . 11) (16 . 13) (19 . 14) (20 . 15) (22 . 16) (23 . 17)) 2.508 {1/55:66} B:0 2.83335 [ 2.50003] ((11 . 2) (13 . 3) (16 . 4) (19 . 7) (20 . 8) (22 . 9)) 3.310 {0/13:15} B:0 3.40001 [ 3.00002] ((13 . 3) (16 . 4) (19 . 7) (20 . 8) (22 . 9)) 3.427 {0/9:10} B:0 SIMILARITY (1/min{score1}): 0.7645 [and 1/min{score2}: 0.8664] [1979, 3900]: Comparing 1gvz_A and 1mbm_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 23 (5 H + 18 S) secondary structure elements in 1mbm_A, of which 17 satisfy the size requirements. 1.30827 [ 1.30827] ((2 . 1) (3 . 2) (4 . 3) (6 . 5) (7 . 6) (8 . 7) (10 . 8) (11 . 9) (13 . 10) (18 . 12) (19 . 13) (20 . 14) (22 . 16)) 4.290 {0/62:78} B:0 1.41709 [ 1.41709] ((2 . 1) (3 . 2) (4 . 3) (6 . 5) (7 . 6) (8 . 7) (10 . 8) (11 . 9) (13 . 10) (18 . 12) (19 . 13) (20 . 14)) 4.207 {0/52:66} B:0 2.42904 [ 2.42904] ((2 . 1) (3 . 2) (4 . 3) (6 . 5) (7 . 6) (8 . 7) (13 . 16)) 6.461 {0/17:21} B:0 2.83341 [ 2.83341] ((11 . 1) (13 . 2) (16 . 3) (19 . 5) (20 . 6) (22 . 8)) 4.605 {0/11:15} B:0 2.83352 [ 2.83352] ((2 . 1) (3 . 2) (4 . 3) (6 . 5) (8 . 7) (11 . 14)) 5.795 {0/10:15} B:0 SIMILARITY (1/min{score1}): 0.7644 [and 1/min{score2}: 0.7644] [1979, 4877]: Comparing 1gvz_A and 1p3c_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 25 (8 H + 17 S) secondary structure elements in 1p3c_A, of which 18 satisfy the size requirements. 1.22719 [ 1.29662] ((2 . 3) (3 . 4) (4 . 5) (6 . 9) (8 . 10) (9 . 11) (10 . 13) (11 . 15) (13 . 17) (16 . 19) (19 . 20) (20 . 21) (22 . 24) (23 . 25)) 3.955 {4/73:91} B:0 1.30899 [ 1.38571] ((2 . 3) (3 . 4) (4 . 5) (6 . 9) (8 . 10) (10 . 13) (11 . 15) (13 . 17) (16 . 19) (19 . 20) (20 . 21) (22 . 24) (23 . 25)) 3.133 {2/63:78} B:0 1.30928 [ 1.38595] ((2 . 3) (3 . 4) (4 . 5) (6 . 9) (7 . 10) (10 . 13) (11 . 15) (13 . 17) (16 . 19) (19 . 20) (20 . 21) (22 . 24) (23 . 25)) 4.040 {2/63:78} B:0 1.41685 [ 1.50016] ((2 . 3) (3 . 4) (4 . 5) (6 . 9) (8 . 10) (10 . 13) (11 . 15) (13 . 17) (16 . 19) (19 . 20) (20 . 21) (23 . 25)) 2.713 {1/53:66} B:0 1.74514 [ 1.77945] ((2 . 3) (3 . 4) (4 . 5) (6 . 9) (8 . 10) (9 . 11) (10 . 13) (11 . 15) (13 . 17) (16 . 19) (19 . 20) (22 . 21) (23 . 25)) 3.675 {10/63:78} B:0 SIMILARITY (1/min{score1}): 0.8149 [and 1/min{score2}: 0.7712] [1979, 4900]: Comparing 1gvz_A and 1p57_B, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 20 (5 H + 15 S) secondary structure elements in 1p57_B, of which 16 satisfy the size requirements. 1.21502 [ 1.14373] ((2 . 2) (3 . 3) (4 . 4) (6 . 8) (7 . 9) (8 . 10) (10 . 11) (11 . 12) (13 . 13) (16 . 15) (19 . 16) (20 . 17) (22 . 18) (23 . 19)) 2.325 {2/76:91} B:0 1.30782 [ 1.23092] ((2 . 2) (3 . 3) (4 . 4) (6 . 8) (7 . 9) (8 . 10) (10 . 11) (11 . 12) (16 . 15) (19 . 16) (20 . 17) (22 . 18) (23 . 19)) 2.395 {1/64:78} B:0 1.89899 [ 1.86650] ((2 . 2) (3 . 3) (4 . 4) (6 . 8) (7 . 9) (8 . 10) (10 . 11) (11 . 12) (16 . 13) (19 . 16) (20 . 17) (23 . 19)) 3.816 {9/52:66} B:0 2.83337 [ 2.66671] ((11 . 2) (13 . 3) (16 . 4) (19 . 8) (20 . 9) (22 . 11)) 3.796 {0/12:15} B:0 3.40063 [ 3.20075] ((3 . 10) (4 . 11) (11 . 16) (13 . 17) (16 . 18)) 8.959 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.8230 [and 1/min{score2}: 0.8743] [1979, 5188]: Comparing 1gvz_A and 1q2w_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 22 (9 H + 13 S) secondary structure elements in 1q2w_A, of which 20 satisfy the size requirements. 1.41690 [ 1.66681] ((2 . 2) (3 . 3) (4 . 4) (6 . 8) (7 . 9) (8 . 10) (10 . 11) (11 . 13) (13 . 14) (19 . 15) (20 . 16) (22 . 17)) 3.019 {1/52:66} B:0 1.54573 [ 1.81835] ((2 . 2) (3 . 3) (4 . 4) (6 . 8) (7 . 9) (8 . 10) (10 . 11) (11 . 13) (13 . 14) (19 . 15) (20 . 16)) 2.743 {1/42:55} B:0 2.42873 [ 2.85724] ((11 . 2) (13 . 3) (16 . 4) (18 . 6) (19 . 8) (20 . 9) (22 . 11)) 4.913 {0/18:21} B:0 2.83342 [ 3.33339] ((11 . 2) (13 . 3) (16 . 4) (18 . 6) (20 . 10) (22 . 11)) 4.805 {0/11:15} B:0 3.40025 [ 4.00015] ((2 . 2) (3 . 3) (4 . 4) (8 . 10) (12 . 15)) 7.100 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.7058 [and 1/min{score2}: 0.5999] [1979, 5492]: Comparing 1gvz_A and 1qy6_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 18 (5 H + 13 S) secondary structure elements in 1qy6_A, of which 16 satisfy the size requirements. 1.30806 [ 1.23121] ((2 . 3) (3 . 4) (4 . 5) (6 . 8) (8 . 9) (10 . 10) (11 . 12) (13 . 13) (16 . 14) (19 . 15) (20 . 16) (22 . 17) (23 . 18)) 3.662 {1/66:78} B:0 1.30867 [ 1.23194] ((2 . 3) (3 . 4) (4 . 5) (6 . 8) (7 . 9) (10 . 10) (11 . 12) (13 . 13) (16 . 14) (19 . 15) (20 . 16) (22 . 17) (23 . 18)) 4.813 {1/65:78} B:0 2.83337 [ 2.66671] ((11 . 3) (13 . 4) (16 . 5) (19 . 8) (20 . 9) (22 . 10)) 3.800 {0/13:15} B:0 2.83396 [ 2.66742] ((2 . 3) (3 . 4) (4 . 5) (6 . 8) (8 . 9) (18 . 18)) 7.825 {0/12:15} B:0 2.83560 [ 2.66938] ((6 . 4) (16 . 14) (19 . 15) (20 . 16) (22 . 17) (23 . 18)) 4.858 {1/15:15} B:0 SIMILARITY (1/min{score1}): 0.7645 [and 1/min{score2}: 0.8122] [1979, 5781]: Comparing 1gvz_A and 1s83_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 18 (4 H + 14 S) secondary structure elements in 1s83_A, of which 15 satisfy the size requirements. 1.21442 [ 1.07163] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (10 . 9) (11 . 10) (13 . 11) (16 . 13) (19 . 14) (20 . 15) (22 . 16) (23 . 18)) 2.608 {1/77:91} B:0 2.83336 [ 2.50004] ((11 . 2) (13 . 3) (16 . 4) (19 . 6) (20 . 7) (22 . 9)) 3.648 {0/12:15} B:0 2.83339 [ 2.50009] ((2 . 10) (3 . 11) (4 . 13) (6 . 14) (7 . 15) (10 . 16)) 4.366 {0/11:15} B:0 2.83341 [ 2.50012] ((6 . 3) (10 . 9) (11 . 10) (13 . 11) (16 . 13) (23 . 18)) 4.672 {0/13:15} B:0 2.83360 [ 2.50039] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 8) (23 . 18)) 6.317 {0/13:15} B:0 SIMILARITY (1/min{score1}): 0.8234 [and 1/min{score2}: 0.9332] [1979, 5811]: Comparing 1gvz_A and 1sgp_E, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 20 (2 H + 18 S) secondary structure elements in 1sgp_E, of which 16 satisfy the size requirements. 1.31466 [ 1.23911] ((2 . 1) (3 . 2) (4 . 4) (6 . 6) (8 . 7) (10 . 8) (11 . 12) (13 . 13) (16 . 15) (19 . 16) (20 . 17) (22 . 18) (23 . 19)) 5.233 {3/63:78} B:0 2.43040 [ 2.28791] ((11 . 1) (13 . 2) (16 . 4) (18 . 5) (19 . 6) (20 . 7) (22 . 8)) 5.032 {1/18:21} B:0 2.83874 [ 2.67315] ((2 . 12) (3 . 13) (4 . 15) (6 . 16) (8 . 17) (10 . 18)) 5.204 {1/12:15} B:0 3.40009 [ 3.20011] ((6 . 2) (10 . 8) (11 . 12) (16 . 15) (23 . 19)) 5.544 {0/9:10} B:0 3.40018 [ 3.20021] ((6 . 2) (7 . 4) (10 . 8) (11 . 12) (23 . 19)) 6.521 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.7607 [and 1/min{score2}: 0.8070] [1979, 5847]: Comparing 1gvz_A and 1ssx_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 22 (3 H + 19 S) secondary structure elements in 1ssx_A, of which 19 satisfy the size requirements. 2.83336 [ 3.16668] ((2 . 12) (3 . 13) (4 . 16) (6 . 17) (8 . 18) (10 . 20)) 3.411 {0/12:15} B:0 2.83341 [ 3.16672] ((11 . 2) (13 . 3) (16 . 5) (19 . 7) (20 . 8) (22 . 9)) 4.627 {0/14:15} B:0 3.40003 [ 3.80002] ((6 . 3) (10 . 9) (13 . 13) (16 . 16) (22 . 20)) 4.063 {0/10:10} B:0 3.40005 [ 3.80003] ((6 . 3) (10 . 9) (11 . 12) (16 . 16) (23 . 21)) 4.670 {0/9:10} B:0 3.40012 [ 3.80008] ((2 . 2) (3 . 3) (4 . 5) (6 . 7) (7 . 8)) 5.899 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.4495 [and 1/min{score2}: 0.4423] [1979, 5864]: Comparing 1gvz_A and 1svp_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 16 (3 H + 13 S) secondary structure elements in 1svp_A, of which 13 satisfy the size requirements. 2.83337 [ 2.16675] ((2 . 10) (3 . 11) (4 . 12) (6 . 13) (8 . 14) (10 . 15)) 3.855 {0/12:15} B:0 2.83349 [ 2.16702] ((2 . 10) (3 . 11) (4 . 12) (6 . 13) (7 . 14) (10 . 15)) 5.543 {0/12:15} B:0 3.40001 [ 2.60003] ((2 . 10) (3 . 11) (4 . 12) (8 . 14) (10 . 15)) 3.326 {0/8:10} B:0 3.40006 [ 2.60013] ((2 . 10) (3 . 11) (4 . 12) (6 . 13) (7 . 14)) 4.975 {0/8:10} B:0 3.40008 [ 2.60019] ((2 . 1) (3 . 2) (4 . 3) (8 . 6) (11 . 14)) 5.421 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.7041 [and 1/min{score2}: 0.9165] [1979, 6471]: Comparing 1gvz_A and 2hlc_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 19 (5 H + 14 S) secondary structure elements in 2hlc_A, of which 17 satisfy the size requirements. 1.21435 [ 1.21435] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (10 . 9) (11 . 11) (13 . 12) (16 . 14) (19 . 15) (20 . 17) (22 . 18) (23 . 19)) 2.309 {0/78:91} B:0 1.30773 [ 1.30773] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (10 . 9) (11 . 11) (13 . 12) (16 . 14) (19 . 15) (20 . 17) (23 . 19)) 2.214 {0/66:78} B:0 2.83337 [ 2.83337] ((2 . 11) (3 . 12) (4 . 14) (6 . 15) (7 . 17) (10 . 18)) 3.736 {0/12:15} B:0 2.83340 [ 2.83340] ((11 . 2) (13 . 3) (16 . 4) (19 . 6) (20 . 8) (22 . 9)) 4.521 {0/12:15} B:0 3.40004 [ 3.40004] ((6 . 3) (10 . 9) (13 . 12) (16 . 14) (23 . 19)) 4.528 {0/9:10} B:0 SIMILARITY (1/min{score1}): 0.8235 [and 1/min{score2}: 0.8235] [1979, 6475]: Comparing 1gvz_A and 2hrv_A, based on their crossing files. There are 23 (6 H + 17 S) secondary structure elements in 1gvz_A, of which 17 satisfy the size requirements. There are 18 (5 H + 13 S) secondary structure elements in 2hrv_A, of which 13 satisfy the size requirements. 1.70037 [ 1.30083] ((3 . 1) (4 . 2) (8 . 5) (10 . 7) (11 . 9) (13 . 11) (16 . 14) (19 . 15) (20 . 16) (22 . 17)) 4.679 {0/35:45} B:0 2.84136 [ 2.18448] ((11 . 9) (13 . 12) (16 . 14) (19 . 15) (20 . 16) (22 . 17)) 7.594 {1/11:15} B:0 4.25011 [ 3.25025] ((11 . 2) (13 . 7) (16 . 9) (22 . 15)) 6.915 {0/5:6} B:0 4.25013 [ 3.25028] ((12 . 2) (13 . 5) (19 . 12) (20 . 13)) 7.107 {0/3:6} B:0 4.25013 [ 3.25029] ((3 . 2) (7 . 7) (8 . 8) (11 . 15)) 7.152 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.5881 [and 1/min{score2}: 0.7687] -------------------------------------------------------------------------------------------------------------------------