------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1979 1gvz_A) ( 64 1a7s ) 0.7646 0.9995 3.0532 ( 1 66 78) 0 0.7646 0.9995 17 13 ( 1979 1gvz_A) ( 123 1agj_A) 0.8233 0.7776 3.5546 ( 0 76 91) 0 0.8233 0.7776 17 18 ( 1979 1gvz_A) ( 192 1arb ) 0.8233 0.7776 3.4440 ( 0 73 91) 0 0.8233 0.7776 17 18 ( 1979 1gvz_A) ( 212 1aut_C) 0.7646 0.8664 3.2518 ( 1 66 78) 0 0.7646 0.8664 17 15 ( 1979 1gvz_A) ( 255 1azz_A) 0.8229 0.8741 3.4231 ( 2 77 91) 0 0.8229 0.8741 17 16 ( 1979 1gvz_A) ( 407 1bio ) 0.8235 0.8750 1.8533 ( 0 78 91) 0 0.8235 0.8750 17 16 ( 1979 1gvz_A) ( 587 1cgh_A) 0.8235 0.9332 2.4990 ( 0 78 91) 0 0.8235 0.9332 17 15 ( 1979 1gvz_A) ( 655 1cqq_A) 0.7639 0.8114 3.6825 ( 2 64 78) 0 0.7639 0.8114 17 16 ( 1979 1gvz_A) ( 819 1df9_A) 0.2694 0.2821 5.8034 ( 6 17 21) 0 0.2694 0.4443 17 9 ( 1979 1gvz_A) ( 872 1dle_A) 0.8230 0.7365 2.5604 ( 2 74 91) 0 0.8230 0.7365 17 19 ( 1979 1gvz_A) ( 1209 1elv_A) 0.7058 0.8569 2.6465 ( 1 56 66) 0 0.7058 0.8569 17 14 ( 1979 1gvz_A) ( 1244 1eq9_A) 0.7646 0.8664 3.1022 ( 1 67 78) 0 0.7646 0.8664 17 15 ( 1979 1gvz_A) ( 1536 1fjs_A) 0.8234 0.8234 2.6704 ( 1 76 91) 0 0.8687 0.8687 17 17 ( 1979 1gvz_A) ( 1805 1gdn_A) 0.8235 0.8749 2.4235 ( 0 76 91) 0 0.8235 0.8749 17 16 ( 1979 1gvz_A) ( 1974 1gvk_B) 0.7645 0.9280 3.6459 ( 1 65 78) 0 0.7645 0.9280 17 14 ( 1979 1gvz_A) ( 1979 1gvz_A) 1.0000 1.0000 0.0000 ( 0 118 136) 0 1.0000 1.0000 17 17 ( 1979 1gvz_A) ( 2154 1hav_A) 0.8227 0.6664 4.0763 ( 2 75 91) 0 0.8227 0.6664 17 21 ( 1979 1gvz_A) ( 3345 1kli_H) 0.8234 0.7777 2.8732 ( 1 76 91) 0 0.8234 0.7777 17 18 ( 1979 1gvz_A) ( 3475 1ky9_A) 0.7637 0.8648 4.5475 ( 2 65 78) 0 0.7637 0.8648 17 15 ( 1979 1gvz_A) ( 3513 1l1j_A) 0.8211 0.7759 3.2282 ( 3 76 91) 0 0.8211 0.7759 17 18 ( 1979 1gvz_A) ( 3597 1lcy_A) 0.7641 0.8655 4.8951 ( 1 65 78) 0 0.7641 0.8655 17 15 ( 1979 1gvz_A) ( 3752 1lvm_B) 0.7638 0.6837 3.7939 ( 2 63 78) 0 0.7638 0.6977 17 19 ( 1979 1gvz_A) ( 3893 1m9u_A) 0.7645 0.8664 3.3129 ( 1 65 78) 0 0.7645 0.8664 17 15 ( 1979 1gvz_A) ( 3900 1mbm_A) 0.7644 0.7644 4.2895 ( 0 62 78) 0 0.7644 0.7644 17 17 ( 1979 1gvz_A) ( 4877 1p3c_A) 0.8149 0.7712 3.9554 ( 4 73 91) 0 0.8149 0.7712 17 18 ( 1979 1gvz_A) ( 4900 1p57_B) 0.8230 0.8743 2.3252 ( 2 76 91) 0 0.8230 0.8743 17 16 ( 1979 1gvz_A) ( 5188 1q2w_A) 0.7058 0.5999 3.0188 ( 1 52 66) 0 0.7058 0.5999 17 20 ( 1979 1gvz_A) ( 5492 1qy6_A) 0.7645 0.8122 3.6624 ( 1 66 78) 0 0.7645 0.8122 17 16 ( 1979 1gvz_A) ( 5781 1s83_A) 0.8234 0.9332 2.6078 ( 1 77 91) 0 0.8234 0.9332 17 15 ( 1979 1gvz_A) ( 5811 1sgp_E) 0.7607 0.8070 5.2332 ( 3 63 78) 0 0.7607 0.8070 17 16 ( 1979 1gvz_A) ( 5847 1ssx_A) 0.3529 0.3158 3.4112 ( 0 12 15) 0 0.4495 0.4423 17 19 ( 1979 1gvz_A) ( 5864 1svp_A) 0.3529 0.4615 3.8551 ( 0 12 15) 0 0.7041 0.9165 17 13 ( 1979 1gvz_A) ( 6471 2hlc_A) 0.8235 0.8235 2.3091 ( 0 78 91) 0 0.8235 0.8235 17 17 ( 1979 1gvz_A) ( 6475 2hrv_A) 0.5881 0.7687 4.6786 ( 0 35 45) 0 0.5881 0.7687 17 13 -------------------------------------------------------------------------------------------------------------------------