------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3597 1lcy_A) ( 64 1a7s ) 0.8663 0.9993 3.6730 ( 0 68 78) 0 0.8663 0.9993 15 13 ( 3597 1lcy_A) ( 123 1agj_A) 0.9754 0.8231 4.3208 ( 5 89 105) 0 0.9754 0.8231 15 18 ( 3597 1lcy_A) ( 192 1arb ) 0.9322 0.7773 4.4426 ( 1 74 91) 0 0.9322 0.7773 15 18 ( 3597 1lcy_A) ( 212 1aut_C) 0.8659 0.8659 4.4805 ( 1 70 78) 0 0.8659 0.8659 15 15 ( 3597 1lcy_A) ( 255 1azz_A) 0.9205 0.8656 4.4363 ( 4 78 91) 0 0.9205 0.8656 15 16 ( 3597 1lcy_A) ( 407 1bio ) 0.9208 0.8658 4.7179 ( 4 79 91) 0 0.9208 0.8658 15 16 ( 3597 1lcy_A) ( 587 1cgh_A) 0.8657 0.8657 4.7516 ( 1 69 78) 0 0.8657 0.8657 15 15 ( 3597 1lcy_A) ( 655 1cqq_A) 0.8649 0.8113 4.7096 ( 2 70 78) 0 0.8649 0.8113 15 16 ( 3597 1lcy_A) ( 819 1df9_A) 0.5247 0.8006 4.9496 ( 2 21 28) 0 0.5247 0.8006 15 9 ( 3597 1lcy_A) ( 872 1dle_A) 0.8659 0.6840 4.5768 ( 0 63 78) 0 0.8659 0.6840 15 19 ( 3597 1lcy_A) ( 1209 1elv_A) 0.8651 0.9264 5.2957 ( 1 65 78) 0 0.8651 0.9264 15 14 ( 3597 1lcy_A) ( 1244 1eq9_A) 0.9296 0.9296 3.4860 ( 3 81 91) 0 0.9296 0.9296 15 15 ( 3597 1lcy_A) ( 1536 1fjs_A) 0.9054 0.8082 5.0029 ( 5 79 91) 0 0.9054 0.8082 15 17 ( 3597 1lcy_A) ( 1805 1gdn_A) 0.9283 0.8714 4.3609 ( 3 77 91) 0 0.9283 0.8714 15 16 ( 3597 1lcy_A) ( 1974 1gvk_B) 0.8660 0.9277 4.1737 ( 1 69 78) 0 0.8660 0.9277 15 14 ( 3597 1lcy_A) ( 1979 1gvz_A) 0.8655 0.7641 4.8951 ( 1 65 78) 0 0.8655 0.7641 15 17 ( 3597 1lcy_A) ( 2154 1hav_A) 0.9289 0.6658 6.0703 ( 2 77 91) 0 0.9289 0.6658 15 21 ( 3597 1lcy_A) ( 3345 1kli_H) 0.9316 0.7771 4.4039 ( 2 79 91) 0 0.9316 0.7771 15 18 ( 3597 1lcy_A) ( 3475 1ky9_A) 0.9537 0.9537 3.3874 ( 6 89 105) 0 0.9537 0.9537 15 15 ( 3597 1lcy_A) ( 3513 1l1j_A) 0.9210 0.7727 5.0000 ( 4 80 91) 0 0.9210 0.7727 15 18 ( 3597 1lcy_A) ( 3597 1lcy_A) 1.0000 1.0000 0.0000 ( 0 95 105) 0 1.0000 1.0000 15 15 ( 3597 1lcy_A) ( 3752 1lvm_B) 0.9264 0.7347 4.7777 ( 3 71 91) 0 0.9264 0.7347 15 19 ( 3597 1lcy_A) ( 3893 1m9u_A) 0.9295 0.9295 3.4609 ( 3 80 91) 0 0.9295 0.9295 15 15 ( 3597 1lcy_A) ( 3900 1mbm_A) 0.4667 0.4118 3.4064 ( 0 18 21) 0 0.5331 0.4705 15 17 ( 3597 1lcy_A) ( 4877 1p3c_A) 0.9312 0.7769 5.2986 ( 1 73 91) 0 0.9312 0.7769 15 18 ( 3597 1lcy_A) ( 4900 1p57_B) 0.8647 0.8111 4.7608 ( 2 67 78) 0 0.8647 0.8111 15 16 ( 3597 1lcy_A) ( 5188 1q2w_A) 0.7975 0.5994 5.1436 ( 2 53 66) 0 0.7975 0.5994 15 20 ( 3597 1lcy_A) ( 5492 1qy6_A) 0.9760 0.9199 3.4738 ( 5 89 105) 0 0.9760 0.9199 15 16 ( 3597 1lcy_A) ( 5781 1s83_A) 0.8655 0.8655 5.0168 ( 0 68 78) 0 0.8655 0.8655 15 15 ( 3597 1lcy_A) ( 5811 1sgp_E) 0.9197 0.8650 4.6340 ( 4 77 91) 0 0.9197 0.8650 15 16 ( 3597 1lcy_A) ( 5847 1ssx_A) 0.8662 0.6841 3.7590 ( 1 70 78) 0 0.8662 0.6841 15 19 ( 3597 1lcy_A) ( 5864 1svp_A) 0.7328 0.8451 5.0831 ( 0 47 55) 0 0.7328 0.8451 15 13 ( 3597 1lcy_A) ( 6471 2hlc_A) 0.9291 0.8213 3.7776 ( 3 79 91) 0 0.9291 0.8213 15 17 ( 3597 1lcy_A) ( 6475 2hrv_A) 0.6658 0.7675 6.3972 ( 0 36 45) 0 0.6658 0.7675 15 13 -------------------------------------------------------------------------------------------------------------------------