------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3893 1m9u_A) ( 64 1a7s ) 0.8666 0.9999 1.9320 ( 0 70 78) 0 0.8666 0.9999 15 13 ( 3893 1m9u_A) ( 123 1agj_A) 0.9325 0.7774 2.6788 ( 2 80 91) 0 0.9325 0.7774 15 18 ( 3893 1m9u_A) ( 192 1arb ) 0.8664 0.7221 3.3527 ( 0 67 78) 0 0.8664 0.7221 15 18 ( 3893 1m9u_A) ( 212 1aut_C) 0.9326 0.9326 2.1983 ( 2 82 91) 0 0.9326 0.9326 15 15 ( 3893 1m9u_A) ( 255 1azz_A) 0.9217 0.8783 3.7015 ( 7 89 105) 0 0.9217 0.8783 15 16 ( 3893 1m9u_A) ( 407 1bio ) 0.9971 0.9354 2.8483 ( 3 93 105) 0 0.9971 0.9354 15 16 ( 3893 1m9u_A) ( 587 1cgh_A) 0.9299 0.9299 2.7694 ( 3 81 91) 0 0.9299 0.9299 15 15 ( 3893 1m9u_A) ( 655 1cqq_A) 0.7996 0.7497 3.9018 ( 1 60 66) 0 0.7996 0.7497 15 16 ( 3893 1m9u_A) ( 819 1df9_A) 0.5014 0.6666 4.3409 ( 3 22 28) 0 0.5014 0.6666 15 9 ( 3893 1m9u_A) ( 872 1dle_A) 0.9193 0.7324 3.0573 ( 4 75 91) 0 0.9193 0.7324 15 19 ( 3893 1m9u_A) ( 1209 1elv_A) 0.9320 0.9981 3.5646 ( 2 75 91) 0 0.9320 0.9981 15 14 ( 3893 1m9u_A) ( 1244 1eq9_A) 0.9916 0.9916 1.6092 ( 4 93 105) 0 0.9916 0.9916 15 15 ( 3893 1m9u_A) ( 1536 1fjs_A) 0.9969 0.8807 2.4889 ( 3 91 105) 0 0.9969 0.8807 15 17 ( 3893 1m9u_A) ( 1805 1gdn_A) 0.9753 0.9194 2.7204 ( 5 88 105) 0 0.9753 0.9194 15 16 ( 3893 1m9u_A) ( 1974 1gvk_B) 0.9326 0.9990 2.3227 ( 2 81 91) 0 0.9326 0.9990 15 14 ( 3893 1m9u_A) ( 1979 1gvz_A) 0.8664 0.7645 3.3129 ( 1 65 78) 0 0.8664 0.7645 15 17 ( 3893 1m9u_A) ( 2154 1hav_A) 0.9288 0.6658 3.7332 ( 3 77 91) 0 0.9288 0.6658 15 21 ( 3893 1m9u_A) ( 3345 1kli_H) 0.9972 0.8322 2.4332 ( 3 93 105) 0 0.9972 0.8322 15 18 ( 3893 1m9u_A) ( 3475 1ky9_A) 0.8366 0.8366 3.9959 ( 7 76 91) 0 0.8366 0.8366 15 15 ( 3893 1m9u_A) ( 3513 1l1j_A) 0.8530 0.7166 3.8462 ( 4 69 78) 0 0.8530 0.7166 15 18 ( 3893 1m9u_A) ( 3597 1lcy_A) 0.9295 0.9295 3.4609 ( 3 80 91) 0 0.9295 0.9295 15 15 ( 3893 1m9u_A) ( 3752 1lvm_B) 0.8648 0.6836 4.4599 ( 2 64 78) 0 0.8648 0.6836 15 19 ( 3893 1m9u_A) ( 3893 1m9u_A) 1.0000 1.0000 0.0000 ( 0 97 105) 0 1.0000 1.0000 15 15 ( 3893 1m9u_A) ( 3900 1mbm_A) 0.7332 0.6470 3.8038 ( 0 47 55) 0 0.7332 0.6470 15 17 ( 3893 1m9u_A) ( 4877 1p3c_A) 0.8664 0.7221 3.1194 ( 1 67 78) 0 0.8664 0.7221 15 18 ( 3893 1m9u_A) ( 4900 1p57_B) 0.9324 0.8743 3.0433 ( 2 79 91) 0 0.9324 0.8743 15 16 ( 3893 1m9u_A) ( 5188 1q2w_A) 0.7332 0.5500 3.2888 ( 0 45 55) 0 0.7332 0.5500 15 20 ( 3893 1m9u_A) ( 5492 1qy6_A) 0.9296 0.8723 3.0290 ( 3 80 91) 0 0.9296 0.8723 15 16 ( 3893 1m9u_A) ( 5781 1s83_A) 0.9324 0.9324 3.1518 ( 2 80 91) 0 0.9324 0.9324 15 15 ( 3893 1m9u_A) ( 5811 1sgp_E) 0.8475 0.8097 4.0795 ( 7 79 91) 0 0.8475 0.8097 15 16 ( 3893 1m9u_A) ( 5847 1ssx_A) 0.8657 0.6839 3.0601 ( 2 71 78) 0 0.8657 0.6839 15 19 ( 3893 1m9u_A) ( 5864 1svp_A) 0.7327 0.8448 5.3500 ( 0 48 55) 0 0.7327 0.8448 15 13 ( 3893 1m9u_A) ( 6471 2hlc_A) 0.9574 0.8586 2.8474 ( 6 91 105) 0 0.9574 0.8586 15 17 ( 3893 1m9u_A) ( 6475 2hrv_A) 0.4000 0.4615 1.9708 ( 0 13 15) 0 0.6533 0.7429 15 13 -------------------------------------------------------------------------------------------------------------------------