------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5188 1q2w_A) ( 64 1a7s ) 0.5500 0.8459 3.4596 ( 0 46 55) 0 0.5500 0.8459 20 13 ( 5188 1q2w_A) ( 123 1agj_A) 0.5500 0.6111 3.4638 ( 0 45 55) 0 0.5500 0.6111 20 18 ( 5188 1q2w_A) ( 192 1arb ) 0.6499 0.7221 3.0284 ( 1 64 78) 0 0.6499 0.7221 20 18 ( 5188 1q2w_A) ( 212 1aut_C) 0.5500 0.7333 2.8932 ( 0 46 55) 0 0.5500 0.7333 20 15 ( 5188 1q2w_A) ( 255 1azz_A) 0.5999 0.7496 4.2858 ( 1 55 66) 0 0.5999 0.7496 20 16 ( 5188 1q2w_A) ( 407 1bio ) 0.6000 0.7499 3.0332 ( 1 56 66) 0 0.6000 0.7499 20 16 ( 5188 1q2w_A) ( 587 1cgh_A) 0.6000 0.7998 2.7827 ( 1 56 66) 0 0.6000 0.7998 20 15 ( 5188 1q2w_A) ( 655 1cqq_A) 0.6497 0.8115 4.0368 ( 2 68 78) 0 0.6497 0.8115 20 16 ( 5188 1q2w_A) ( 819 1df9_A) 0.3469 0.6627 5.2954 ( 2 16 21) 0 0.3469 0.6664 20 9 ( 5188 1q2w_A) ( 872 1dle_A) 0.5500 0.5789 2.4488 ( 0 45 55) 0 0.5500 0.5789 20 19 ( 5188 1q2w_A) ( 1209 1elv_A) 0.5000 0.7142 2.8328 ( 0 36 45) 0 0.5000 0.7142 20 14 ( 5188 1q2w_A) ( 1244 1eq9_A) 0.5500 0.7332 3.3876 ( 0 46 55) 0 0.5500 0.7332 20 15 ( 5188 1q2w_A) ( 1536 1fjs_A) 0.6000 0.7058 2.3384 ( 1 57 66) 0 0.6000 0.7058 20 17 ( 5188 1q2w_A) ( 1805 1gdn_A) 0.5999 0.7498 3.4088 ( 1 54 66) 0 0.5999 0.7498 20 16 ( 5188 1q2w_A) ( 1974 1gvk_B) 0.5500 0.7855 3.5412 ( 0 44 55) 0 0.5993 0.8528 20 14 ( 5188 1q2w_A) ( 1979 1gvz_A) 0.5999 0.7058 3.0188 ( 1 52 66) 0 0.5999 0.7058 20 17 ( 5188 1q2w_A) ( 2154 1hav_A) 0.6496 0.6188 3.8895 ( 2 64 78) 0 0.6704 0.6430 20 21 ( 5188 1q2w_A) ( 3345 1kli_H) 0.6000 0.6666 3.0947 ( 1 57 66) 0 0.6232 0.6791 20 18 ( 5188 1q2w_A) ( 3475 1ky9_A) 0.5997 0.7989 5.2771 ( 1 54 66) 0 0.5997 0.7989 20 15 ( 5188 1q2w_A) ( 3513 1l1j_A) 0.6487 0.7200 3.9734 ( 3 66 78) 0 0.6487 0.7200 20 18 ( 5188 1q2w_A) ( 3597 1lcy_A) 0.5994 0.7975 5.1436 ( 2 53 66) 0 0.5994 0.7975 20 15 ( 5188 1q2w_A) ( 3752 1lvm_B) 0.6484 0.6822 3.9003 ( 3 63 78) 0 0.6484 0.6822 20 19 ( 5188 1q2w_A) ( 3893 1m9u_A) 0.5500 0.7332 3.2888 ( 0 45 55) 0 0.5500 0.7332 20 15 ( 5188 1q2w_A) ( 3900 1mbm_A) 0.6482 0.7606 4.9533 ( 3 62 78) 0 0.6482 0.7606 20 17 ( 5188 1q2w_A) ( 4877 1p3c_A) 0.5999 0.6665 3.6660 ( 1 52 66) 0 0.6478 0.7185 20 18 ( 5188 1q2w_A) ( 4900 1p57_B) 0.6000 0.7499 2.1918 ( 1 56 66) 0 0.6000 0.7499 20 16 ( 5188 1q2w_A) ( 5188 1q2w_A) 1.0000 1.0000 0.0000 ( 0 165 190) 0 1.0000 1.0000 20 20 ( 5188 1q2w_A) ( 5492 1qy6_A) 0.5999 0.7498 3.9749 ( 0 53 66) 0 0.5999 0.7498 20 16 ( 5188 1q2w_A) ( 5781 1s83_A) 0.6000 0.7998 2.8642 ( 1 55 66) 0 0.6000 0.7998 20 15 ( 5188 1q2w_A) ( 5811 1sgp_E) 0.5499 0.6872 4.8895 ( 0 46 55) 0 0.6393 0.7816 20 16 ( 5188 1q2w_A) ( 5847 1ssx_A) 0.5499 0.5788 4.6270 ( 0 45 55) 0 0.5499 0.5788 20 19 ( 5188 1q2w_A) ( 5864 1svp_A) 0.4999 0.7686 4.9059 ( 0 35 45) 0 0.4999 0.7686 20 13 ( 5188 1q2w_A) ( 6471 2hlc_A) 0.6000 0.7058 2.9101 ( 1 56 66) 0 0.6000 0.7058 20 17 ( 5188 1q2w_A) ( 6475 2hrv_A) 0.2500 0.3846 3.8963 ( 0 8 10) 0 0.3952 0.5788 20 13 -------------------------------------------------------------------------------------------------------------------------