------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 655 1cqq_A) ( 64 1a7s ) 0.7499 0.9227 3.1564 ( 1 61 66) 0 0.7499 0.9227 16 13 ( 655 1cqq_A) ( 123 1agj_A) 0.7498 0.6665 3.7147 ( 1 60 66) 0 0.7498 0.6665 16 18 ( 655 1cqq_A) ( 192 1arb ) 0.8718 0.7760 3.9303 ( 3 78 91) 0 0.8718 0.7760 16 18 ( 655 1cqq_A) ( 212 1aut_C) 0.7499 0.7998 3.4343 ( 0 60 66) 0 0.7499 0.7998 16 15 ( 655 1cqq_A) ( 255 1azz_A) 0.8118 0.8118 3.0938 ( 2 69 78) 0 0.8118 0.8118 16 16 ( 655 1cqq_A) ( 407 1bio ) 0.8117 0.8117 2.9991 ( 2 68 78) 0 0.8117 0.8117 16 16 ( 655 1cqq_A) ( 587 1cgh_A) 0.8117 0.8656 3.1154 ( 2 69 78) 0 0.8117 0.8656 16 15 ( 655 1cqq_A) ( 655 1cqq_A) 1.0000 1.0000 0.0000 ( 0 110 120) 0 1.0000 1.0000 16 16 ( 655 1cqq_A) ( 819 1df9_A) 0.3750 0.6666 3.2888 ( 0 12 15) 0 0.3750 0.6666 16 9 ( 655 1cqq_A) ( 872 1dle_A) 0.7499 0.6315 3.4135 ( 0 56 66) 0 0.7499 0.6315 16 19 ( 655 1cqq_A) ( 1209 1elv_A) 0.6875 0.7856 3.0163 ( 0 47 55) 0 0.6875 0.7856 16 14 ( 655 1cqq_A) ( 1244 1eq9_A) 0.7498 0.7998 3.4657 ( 1 61 66) 0 0.7498 0.7998 16 15 ( 655 1cqq_A) ( 1536 1fjs_A) 0.8117 0.7641 3.3977 ( 2 68 78) 0 0.8117 0.7641 16 17 ( 655 1cqq_A) ( 1805 1gdn_A) 0.8117 0.8117 2.9194 ( 2 67 78) 0 0.8117 0.8117 16 16 ( 655 1cqq_A) ( 1974 1gvk_B) 0.7496 0.8563 4.5023 ( 1 59 66) 0 0.7609 0.8563 16 14 ( 655 1cqq_A) ( 1979 1gvz_A) 0.8114 0.7639 3.6825 ( 2 64 78) 0 0.8114 0.7639 16 17 ( 655 1cqq_A) ( 2154 1hav_A) 0.9939 0.7603 3.7340 ( 4 104 120) 0 0.9939 0.7603 16 21 ( 655 1cqq_A) ( 3345 1kli_H) 0.8117 0.7218 3.2049 ( 2 68 78) 0 0.8117 0.7218 16 18 ( 655 1cqq_A) ( 3475 1ky9_A) 0.8116 0.8654 5.0820 ( 0 69 78) 0 0.8116 0.8654 16 15 ( 655 1cqq_A) ( 3513 1l1j_A) 0.9213 0.8242 3.4949 ( 5 91 105) 0 0.9213 0.8242 16 18 ( 655 1cqq_A) ( 3597 1lcy_A) 0.8113 0.8649 4.7096 ( 2 70 78) 0 0.8113 0.8649 16 15 ( 655 1cqq_A) ( 3752 1lvm_B) 0.3125 0.2632 4.7851 ( 0 9 10) 0 0.9462 0.8177 16 19 ( 655 1cqq_A) ( 3893 1m9u_A) 0.7497 0.7996 3.9018 ( 1 60 66) 0 0.7497 0.7996 16 15 ( 655 1cqq_A) ( 3900 1mbm_A) 0.7491 0.7052 3.0509 ( 2 58 66) 0 0.7491 0.7052 16 17 ( 655 1cqq_A) ( 4877 1p3c_A) 0.8117 0.7218 4.8212 ( 1 65 78) 0 0.8117 0.7218 16 18 ( 655 1cqq_A) ( 4900 1p57_B) 0.8116 0.8116 3.3966 ( 2 66 78) 0 0.8117 0.8117 16 16 ( 655 1cqq_A) ( 5188 1q2w_A) 0.8115 0.6497 4.0368 ( 2 68 78) 0 0.8115 0.6497 16 20 ( 655 1cqq_A) ( 5492 1qy6_A) 0.8121 0.8121 4.1605 ( 0 67 78) 0 0.8121 0.8121 16 16 ( 655 1cqq_A) ( 5781 1s83_A) 0.8116 0.8655 3.2428 ( 2 67 78) 0 0.8116 0.8655 16 15 ( 655 1cqq_A) ( 5811 1sgp_E) 0.6454 0.6454 5.1989 ( 9 66 78) 0 0.7563 0.7563 16 16 ( 655 1cqq_A) ( 5847 1ssx_A) 0.8744 0.7366 4.1269 ( 0 77 91) 0 0.8744 0.7366 16 19 ( 655 1cqq_A) ( 5864 1svp_A) 0.6874 0.8459 3.5484 ( 0 47 55) 0 0.6874 0.8459 16 13 ( 655 1cqq_A) ( 6471 2hlc_A) 0.8117 0.7641 3.1916 ( 2 69 78) 0 0.8117 0.7641 16 17 ( 655 1cqq_A) ( 6475 2hrv_A) 0.7497 0.9222 3.8564 ( 1 49 66) 0 0.7497 0.9222 16 13 -------------------------------------------------------------------------------------------------------------------------