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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1559 1fmb  )  (  908 1dpj_A)     0.5719   0.2481   6.6310 (   4   24   28)   0     0.5719   0.2481    9  32
( 1559 1fmb  )  ( 1541 1fkn_A)     0.7683   0.2333   5.8816 (   1   17   21)   0     0.7683   0.2604    9  30
( 1559 1fmb  )  ( 1559 1fmb  )     1.0000   1.0000   0.0000 (   0   29   36)   0     1.0000   1.0000    9   9
( 1559 1fmb  )  ( 2272 1hrn_A)     0.6958   0.2331   4.9919 (   2   18   21)   0     0.6958   0.2331    9  30
( 1559 1fmb  )  ( 2751 1j71_A)     0.7765   0.2121   5.8168 (   0   13   21)   0     0.7765   0.2121    9  33
( 1559 1fmb  )  ( 3611 1lf2_A)     0.7765   0.2414   5.8195 (   0   15   21)   0     0.7765   0.2414    9  29
( 1559 1fmb  )  ( 4005 1mpp  )     0.7679   0.2000   6.2837 (   1   17   21)   0     0.7679   0.2149    9  35
( 1559 1fmb  )  ( 4246 1nh0_A)     0.6629   0.7006   4.0669 (   2   16   21)   0     0.6629   0.7238    9   8
( 1559 1fmb  )  ( 4378 1nso_A)     0.6369   0.7686   5.4402 (   1   10   15)   0     0.6369   0.7686    9   7
( 1559 1fmb  )  ( 4618 1oew_A)     0.7703   0.2258   5.3019 (   1   18   21)   0     0.7703   0.2443    9  31
( 1559 1fmb  )  ( 6394 2apr  )     0.7698   0.2258   5.9998 (   1   18   21)   0     0.7698   0.2537    9  31
( 1559 1fmb  )  ( 6525 2rsp_A)     0.6664   0.4999   4.6556 (   0   12   15)   0     0.6664   0.4999    9  12
( 1559 1fmb  )  ( 6610 4fiv  )     0.5314   0.5380   4.6562 (   4   22   28)   0     0.5314   0.5380    9   8

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