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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2272 1hrn_A)  (  908 1dpj_A)     0.7387   0.7212   2.9707 (  40  328  406)   0     0.7387   0.7212   30  32
( 2272 1hrn_A)  ( 1541 1fkn_A)     0.8222   0.8222   3.6505 (  14  242  300)   0     0.8222   0.8222   30  30
( 2272 1hrn_A)  ( 1559 1fmb  )     0.2331   0.6958   4.9919 (   2   18   21)   0     0.2331   0.6958   30   9
( 2272 1hrn_A)  ( 2272 1hrn_A)     1.0000   1.0000   0.0000 (   0  378  435)   0     1.0000   1.0000   30  30
( 2272 1hrn_A)  ( 2751 1j71_A)     0.8077   0.7412   3.6248 (  17  235  300)   0     0.8077   0.7412   30  33
( 2272 1hrn_A)  ( 3611 1lf2_A)     0.8773   0.9043   2.4681 (  18  283  351)   0     0.8773   0.9043   30  29
( 2272 1hrn_A)  ( 4005 1mpp  )     0.9040   0.7860   3.1340 (  20  308  378)   0     0.9040   0.7860   30  35
( 2272 1hrn_A)  ( 4246 1nh0_A)     0.2507   0.3650   4.9796 (   6   22   28)   0     0.2507   0.8599   30   8
( 2272 1hrn_A)  ( 4378 1nso_A)     0.1333   0.5714   2.2644 (   0    5    6)   0     0.1958   0.7142   30   7
( 2272 1hrn_A)  ( 4618 1oew_A)     0.8688   0.8442   3.1485 (  20  289  351)   0     0.8688   0.8442   30  31
( 2272 1hrn_A)  ( 6394 2apr  )     0.9481   0.9196   2.2697 (  19  345  406)   0     0.9481   0.9196   30  31
( 2272 1hrn_A)  ( 6525 2rsp_A)     0.3637   0.7442   5.6145 (   5   43   55)   0     0.3637   0.7442   30  12
( 2272 1hrn_A)  ( 6610 4fiv  )     0.2667   0.9923   2.9891 (   1   24   28)   0     0.2667   0.9923   30   8

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