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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2751 1j71_A)  (  908 1dpj_A)     0.7870   0.8114   3.5717 (   8  255  325)   0     0.7870   0.8114   33  32
( 2751 1j71_A)  ( 1541 1fkn_A)     0.7107   0.7739   4.8700 (  17  223  276)   0     0.7346   0.7976   33  30
( 2751 1j71_A)  ( 1559 1fmb  )     0.2121   0.7765   5.8168 (   0   13   21)   0     0.2121   0.7765   33   9
( 2751 1j71_A)  ( 2272 1hrn_A)     0.7412   0.8077   3.6248 (  17  235  300)   0     0.7412   0.8077   33  30
( 2751 1j71_A)  ( 2751 1j71_A)     1.0000   1.0000   0.0000 (   0  442  528)   0     1.0000   1.0000   33  33
( 2751 1j71_A)  ( 3611 1lf2_A)     0.8066   0.9095   3.5406 (  17  284  351)   0     0.8066   0.9095   33  29
( 2751 1j71_A)  ( 4005 1mpp  )     0.8680   0.8205   2.7752 (  18  334  406)   0     0.8680   0.8205   33  35
( 2751 1j71_A)  ( 4246 1nh0_A)     0.2424   0.9892   4.9032 (   1   23   28)   0     0.2424   0.9892   33   8
( 2751 1j71_A)  ( 4378 1nso_A)     0.1780   0.3314   4.9958 (   3   10   15)   0     0.1780   0.5713   33   7
( 2751 1j71_A)  ( 4618 1oew_A)     0.8658   0.9179   2.5336 (  19  336  406)   0     0.8658   0.9179   33  31
( 2751 1j71_A)  ( 6394 2apr  )     0.8034   0.8511   3.5561 (  18  282  351)   0     0.8034   0.8511   33  31
( 2751 1j71_A)  ( 6525 2rsp_A)     0.3151   0.4622   4.4486 (  10   47   55)   0     0.3282   0.7998   33  12
( 2751 1j71_A)  ( 6610 4fiv  )     0.2424   0.9914   4.2466 (   1   24   28)   0     0.2424   0.9914   33   8

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