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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4005 1mpp  )  (  908 1dpj_A)     0.8273   0.9042   3.0598 (  11  333  406)   0     0.8273   0.9042   35  32
( 4005 1mpp  )  ( 1541 1fkn_A)     0.4285   0.4999   2.9219 (   3   92  105)   0     0.5065   0.5295   35  30
( 4005 1mpp  )  ( 1559 1fmb  )     0.1999   0.6956   5.4967 (   2   18   21)   0     0.2149   0.6956   35   9
( 4005 1mpp  )  ( 2272 1hrn_A)     0.7860   0.9040   3.1340 (  20  308  378)   0     0.7860   0.9040   35  30
( 4005 1mpp  )  ( 2751 1j71_A)     0.8205   0.8680   2.7752 (  18  334  406)   0     0.8205   0.8680   35  33
( 4005 1mpp  )  ( 3611 1lf2_A)     0.8221   0.9837   2.7828 (  17  334  406)   0     0.8221   0.9837   35  29
( 4005 1mpp  )  ( 4005 1mpp  )     1.0000   1.0000   0.0000 (   0  516  595)   0     1.0000   1.0000   35  35
( 4005 1mpp  )  ( 4246 1nh0_A)     0.2286   0.9790   7.3995 (   1   22   28)   0     0.2286   0.9790   35   8
( 4005 1mpp  )  ( 4378 1nso_A)     0.1429   0.7122   7.4143 (   0    7   10)   0     0.1970   0.7142   35   7
( 4005 1mpp  )  ( 4618 1oew_A)     0.8406   0.9383   2.4447 (  23  370  435)   0     0.8406   0.9383   35  31
( 4005 1mpp  )  ( 6394 2apr  )     0.8249   0.9287   2.7797 (  15  341  406)   0     0.8249   0.9287   35  31
( 4005 1mpp  )  ( 6525 2rsp_A)     0.3419   0.8626   5.5209 (   5   53   66)   0     0.3419   0.8626   35  12
( 4005 1mpp  )  ( 6610 4fiv  )     0.2286   0.9901   4.2207 (   1   23   28)   0     0.2286   0.9901   35   8

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