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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4246 1nh0_A)  (  908 1dpj_A)     0.4999   0.1250   4.8409 (   0    6    6)   0     0.4999   0.2298    8  32
( 4246 1nh0_A)  ( 1541 1fkn_A)     0.4999   0.1333   5.8441 (   0    5    6)   0     0.8398   0.2333    8  30
( 4246 1nh0_A)  ( 1559 1fmb  )     0.7238   0.6516   3.2763 (   1   12   15)   0     0.7238   0.6629    8   9
( 4246 1nh0_A)  ( 2272 1hrn_A)     0.8599   0.2333   3.8678 (   1   17   21)   0     0.8599   0.2507    8  30
( 4246 1nh0_A)  ( 2751 1j71_A)     0.9892   0.2424   4.9032 (   1   23   28)   0     0.9892   0.2424    8  33
( 4246 1nh0_A)  ( 3611 1lf2_A)     0.8596   0.2414   4.3937 (   1   17   21)   0     0.8596   0.2599    8  29
( 4246 1nh0_A)  ( 4005 1mpp  )     0.9790   0.2286   7.3995 (   1   22   28)   0     0.9790   0.2286    8  35
( 4246 1nh0_A)  ( 4246 1nh0_A)     1.0000   1.0000   0.0000 (   0   24   28)   0     1.0000   1.0000    8   8
( 4246 1nh0_A)  ( 4378 1nso_A)     0.6250   0.7142   3.1236 (   0    7   10)   0     0.6250   0.7142    8   7
( 4246 1nh0_A)  ( 4618 1oew_A)     0.5505   0.1930   5.0147 (   2   12   15)   0     0.6981   0.2443    8  31
( 4246 1nh0_A)  ( 6394 2apr  )     0.6247   0.1613   5.3768 (   0    7   10)   0     0.8620   0.2443    8  31
( 4246 1nh0_A)  ( 6525 2rsp_A)     0.7248   0.5548   3.1021 (   2   17   21)   0     0.7248   0.5852    8  12
( 4246 1nh0_A)  ( 6610 4fiv  )     0.8631   0.8631   2.2962 (   1   18   21)   0     0.8631   0.8631    8   8

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