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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4378 1nso_A)  (  908 1dpj_A)     0.5714   0.1250   3.8123 (   0    5    6)   0     0.5714   0.1377    7  32
( 4378 1nso_A)  ( 1541 1fkn_A)     0.5712   0.1333   5.7940 (   0    5    6)   0     0.5713   0.1333    7  30
( 4378 1nso_A)  ( 1559 1fmb  )     0.7686   0.6369   5.4402 (   1   10   15)   0     0.7686   0.6369    7   9
( 4378 1nso_A)  ( 2272 1hrn_A)     0.5714   0.1333   2.2644 (   0    5    6)   0     0.7142   0.1958    7  30
( 4378 1nso_A)  ( 2751 1j71_A)     0.5709   0.1212   6.9665 (   0    4    6)   0     0.5713   0.1911    7  33
( 4378 1nso_A)  ( 3611 1lf2_A)     0.7131   0.1724   6.4588 (   0    7   10)   0     0.7131   0.2059    7  29
( 4378 1nso_A)  ( 4005 1mpp  )     0.7122   0.1429   7.4143 (   0    7   10)   0     0.7142   0.1970    7  35
( 4378 1nso_A)  ( 4246 1nh0_A)     0.7142   0.6250   3.1236 (   0    7   10)   0     0.7142   0.6250    7   8
( 4378 1nso_A)  ( 4378 1nso_A)     1.0000   1.0000   0.0000 (   0   17   21)   0     1.0000   1.0000    7   7
( 4378 1nso_A)  ( 4618 1oew_A)     0.5710   0.1290   6.4389 (   0    4    6)   0     0.5714   0.1900    7  31
( 4378 1nso_A)  ( 6394 2apr  )     0.7140   0.1613   4.5484 (   0    7   10)   0     0.8557   0.1935    7  31
( 4378 1nso_A)  ( 6525 2rsp_A)     0.7142   0.4167   3.4307 (   0    6   10)   0     0.7142   0.4167    7  12
( 4378 1nso_A)  ( 6610 4fiv  )     0.7141   0.6249   3.8613 (   0    7   10)   0     0.7141   0.6249    7   8

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