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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 6525 2rsp_A) ( 908 1dpj_A) 0.5532 0.2486 5.6600 ( 4 26 28) 0 0.6631 0.2802 12 32
( 6525 2rsp_A) ( 1541 1fkn_A) 0.3629 0.1659 8.3090 ( 2 9 10) 0 0.5953 0.3234 12 30
( 6525 2rsp_A) ( 1559 1fmb ) 0.4999 0.6664 4.6556 ( 0 12 15) 0 0.4999 0.6664 12 9
( 6525 2rsp_A) ( 2272 1hrn_A) 0.9070 0.3666 5.5816 ( 2 43 55) 0 0.9070 0.3666 12 30
( 6525 2rsp_A) ( 2751 1j71_A) 0.5675 0.2120 3.4994 ( 2 20 21) 0 0.7998 0.3282 12 33
( 6525 2rsp_A) ( 3611 1lf2_A) 0.4962 0.2069 4.8101 ( 1 12 15) 0 0.9309 0.4128 12 29
( 6525 2rsp_A) ( 4005 1mpp ) 0.6934 0.3121 5.5064 ( 6 46 55) 0 0.6934 0.3203 12 35
( 6525 2rsp_A) ( 4246 1nh0_A) 0.5548 0.7248 3.1021 ( 2 17 21) 0 0.5852 0.7248 12 8
( 6525 2rsp_A) ( 4378 1nso_A) 0.4167 0.7142 3.4307 ( 0 6 10) 0 0.4167 0.7142 12 7
( 6525 2rsp_A) ( 4618 1oew_A) 0.4632 0.3074 4.7050 ( 8 38 45) 0 0.6632 0.3785 12 31
( 6525 2rsp_A) ( 6394 2apr ) 0.8882 0.3546 5.0498 ( 3 46 55) 0 0.8882 0.3779 12 31
( 6525 2rsp_A) ( 6525 2rsp_A) 1.0000 1.0000 0.0000 ( 0 60 66) 0 1.0000 1.0000 12 12
( 6525 2rsp_A) ( 6610 4fiv ) 0.6040 0.7336 5.1210 ( 3 24 28) 0 0.6040 0.7336 12 8
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