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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6610 4fiv  )  (  908 1dpj_A)     0.6249   0.1562   4.3386 (   0    9   10)   0     0.7344   0.2204    8  32
( 6610 4fiv  )  ( 1541 1fkn_A)     0.8560   0.2333   3.9167 (   1   16   21)   0     0.8563   0.2333    8  30
( 6610 4fiv  )  ( 1559 1fmb  )     0.5380   0.5314   4.6562 (   4   22   28)   0     0.5380   0.5314    8   9
( 6610 4fiv  )  ( 2272 1hrn_A)     0.9923   0.2667   2.9891 (   1   24   28)   0     0.9923   0.2667    8  30
( 6610 4fiv  )  ( 2751 1j71_A)     0.9914   0.2424   4.2466 (   1   24   28)   0     0.9914   0.2424    8  33
( 6610 4fiv  )  ( 3611 1lf2_A)     0.9921   0.2758   3.3676 (   1   24   28)   0     0.9921   0.2758    8  29
( 6610 4fiv  )  ( 4005 1mpp  )     0.9901   0.2286   4.2207 (   1   23   28)   0     0.9901   0.2286    8  35
( 6610 4fiv  )  ( 4246 1nh0_A)     0.8631   0.8631   2.2962 (   1   18   21)   0     0.8631   0.8631    8   8
( 6610 4fiv  )  ( 4378 1nso_A)     0.6249   0.7141   3.8613 (   0    7   10)   0     0.6249   0.7141    8   7
( 6610 4fiv  )  ( 4618 1oew_A)     0.9059   0.2579   3.6743 (   2   24   28)   0     0.9059   0.2579    8  31
( 6610 4fiv  )  ( 6394 2apr  )     0.8928   0.2579   3.5565 (   2   23   28)   0     0.8928   0.2579    8  31
( 6610 4fiv  )  ( 6525 2rsp_A)     0.7336   0.6040   5.1210 (   3   24   28)   0     0.7336   0.6040    8  12
( 6610 4fiv  )  ( 6610 4fiv  )     1.0000   1.0000   0.0000 (   0   25   28)   0     1.0000   1.0000    8   8

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