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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  908 1dpj_A)  (  908 1dpj_A)     1.0000   1.0000   0.0000 (   0  430  496)   0     1.0000   1.0000   32  32
(  908 1dpj_A)  ( 1541 1fkn_A)     0.7128   0.7440   2.4168 (  26  249  300)   0     0.7128   0.7440   32  30
(  908 1dpj_A)  ( 1559 1fmb  )     0.2481   0.5719   6.6310 (   4   24   28)   0     0.2481   0.5719   32   9
(  908 1dpj_A)  ( 2272 1hrn_A)     0.7212   0.7387   2.9707 (  40  328  406)   0     0.7212   0.7387   32  30
(  908 1dpj_A)  ( 2751 1j71_A)     0.8114   0.7870   3.5717 (   8  255  325)   0     0.8114   0.7870   32  33
(  908 1dpj_A)  ( 3611 1lf2_A)     0.8042   0.8592   3.0695 (  28  308  378)   0     0.8042   0.8592   32  29
(  908 1dpj_A)  ( 4005 1mpp  )     0.9042   0.8273   3.0598 (  11  333  406)   0     0.9042   0.8273   32  35
(  908 1dpj_A)  ( 4246 1nh0_A)     0.1910   0.2372   6.3057 (   8   19   21)   0     0.2298   0.6246   32   8
(  908 1dpj_A)  ( 4378 1nso_A)     0.1250   0.5714   3.8123 (   0    5    6)   0     0.1377   0.5714   32   7
(  908 1dpj_A)  ( 4618 1oew_A)     0.8551   0.8801   3.2317 (  20  315  378)   0     0.8551   0.8801   32  31
(  908 1dpj_A)  ( 6394 2apr  )     0.9002   0.9284   3.2238 (  15  338  406)   0     0.9002   0.9284   32  31
(  908 1dpj_A)  ( 6525 2rsp_A)     0.2486   0.5532   5.6600 (   4   26   28)   0     0.2802   0.6631   32  12
(  908 1dpj_A)  ( 6610 4fiv  )     0.2204   0.2774   4.9115 (   9   25   28)   0     0.2204   0.7344   32   8

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