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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  199 1at3_A)  (  199 1at3_A)     1.0000   1.0000   0.0000 (   0   87  105)   0     1.0000   1.0000   15  15
(  199 1at3_A)  ( 1543 1fl1_A)     0.8438   0.9554   3.6536 (   4   60   78)   0     0.8438   0.9554   15  13
(  199 1at3_A)  ( 2468 1ieg_A)     0.9680   0.9139   2.6743 (   5   82  105)   0     0.9680   0.9139   15  16

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