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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(   39 1a49_A)  (   39 1a49_A)     1.0000   1.0000   0.0000 (   0   18   21)   0     1.0000   1.0000    7   7
(   39 1a49_A)  (  994 1e0t_A)     0.8571   0.6667   0.8302 (   0   12   15)   0     0.8571   0.6667    7   9
(   39 1a49_A)  ( 4507 1o65_A)     0.8570   0.3158   3.2293 (   0   12   15)   0     0.8570   0.3158    7  19
(   39 1a49_A)  ( 4767 1oru_A)     0.5711   0.2353   6.3315 (   0    5    6)   0     0.8555   0.3529    7  17
(   39 1a49_A)  ( 5038 1pkl_A)     0.8571   0.6667   0.5462 (   0   12   15)   0     0.8571   0.6667    7   9

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