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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4438 1nyc_A)  ( 1169 1ei5_A)     0.6648   0.7466   7.8246 (   0   10   15)   0     0.6648   0.7466    9   8
( 4438 1nyc_A)  ( 1170 1ei5_A)     0.5553   0.6245   6.0884 (   0    6   10)   0     0.5553   0.6245    9   8
( 4438 1nyc_A)  ( 2895 1jiw_I)     0.6645   0.6645   8.0970 (   0   11   15)   0     0.6645   0.6645    9   9
( 4438 1nyc_A)  ( 2986 1jmx_A)     0.5554   0.5554   5.6364 (   0    6   10)   0     0.5554   0.5554    9   9
( 4438 1nyc_A)  ( 3153 1k3b_A)     0.6659   0.6659   6.3390 (   0   10   15)   0     0.6659   0.6659    9   9
( 4438 1nyc_A)  ( 3740 1luq_A)     0.5554   0.5554   5.5777 (   0    7   10)   0     0.5554   0.5554    9   9
( 4438 1nyc_A)  ( 4356 1nqn_A)     0.5554   0.5554   4.9026 (   0    7   10)   0     0.5554   0.5554    9   9
( 4438 1nyc_A)  ( 4438 1nyc_A)     1.0000   1.0000   0.0000 (   0   29   36)   0     1.0000   1.0000    9   9
( 4438 1nyc_A)  ( 4653 1oh1_A)     0.9991   0.9991   3.8966 (   0   28   36)   0     0.9991   0.9991    9   9
( 4438 1nyc_A)  ( 4966 1pby_A)     0.5550   0.6240   7.2546 (   0    7   10)   0     0.6662   0.7492    9   8
( 4438 1nyc_A)  ( 5828 1smp_I)     0.6649   0.6649   7.7521 (   0   11   15)   0     0.6663   0.6663    9   9
( 4438 1nyc_A)  ( 6337 1wub_A)     0.5552   0.3846   6.4431 (   0    6   10)   0     0.8853   0.6148    9  13

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