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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 2988 1jmx_B) ( 15 1a12_A) 0.3000 0.2903 3.9720 ( 1 21 36) 0 0.8632 0.8357 30 31
( 2988 1jmx_B) ( 1250 1erj_A) 0.3333 0.3333 4.0021 ( 0 33 45) 0 0.8990 0.8990 30 30
( 2988 1jmx_B) ( 1643 1fwx_A) 0.3000 0.2432 5.3317 ( 0 20 36) 0 0.9300 0.7556 30 37
( 2988 1jmx_B) ( 2000 1gxr_A) 0.3333 0.3226 4.3081 ( 0 31 45) 0 0.8990 0.8701 30 31
( 2988 1jmx_B) ( 2988 1jmx_B) 1.0000 1.0000 0.0000 ( 0 353 435) 0 1.0000 1.0000 30 30
( 2988 1jmx_B) ( 3002 1jof_A) 0.8986 0.9293 5.0282 ( 2 250 351) 0 0.8988 0.9296 30 29
( 2988 1jmx_B) ( 3055 1jtd_B) 0.2333 0.3333 4.2859 ( 0 8 21) 0 0.3745 0.3806 30 21
( 2988 1jmx_B) ( 3148 1k32_A) 0.3968 0.3968 5.2029 ( 48 193 300) 0 0.7981 0.7981 30 30
( 2988 1jmx_B) ( 3158 1k3i_A) 0.3000 0.3103 3.2230 ( 0 29 36) 0 0.8989 0.9297 30 29
( 2988 1jmx_B) ( 3211 1k8k_C) 0.3667 0.3548 3.2539 ( 0 40 55) 0 0.9295 0.9000 30 31
( 2988 1jmx_B) ( 3506 1l0q_A) 0.8994 0.9634 4.0757 ( 2 254 351) 0 0.8994 0.9634 30 28
( 2988 1jmx_B) ( 3790 1m1x_A) 0.8658 0.8119 4.6437 ( 0 216 325) 1 0.8658 0.8119 30 32
( 2988 1jmx_B) ( 3908 1mda_H) 0.4333 0.4193 3.4004 ( 0 51 78) 0 0.8414 0.8171 30 31
( 2988 1jmx_B) ( 4223 1nex_B) 0.3333 0.3125 3.4597 ( 0 32 45) 0 0.8657 0.8118 30 32
( 2988 1jmx_B) ( 4359 1nr0_A) 0.3000 0.3462 3.1346 ( 0 24 36) 0 0.8326 0.9601 30 26
( 2988 1jmx_B) ( 4360 1nr0_A) 0.3000 0.3214 3.1572 ( 0 26 36) 0 0.7270 0.7505 30 28
( 2988 1jmx_B) ( 4706 1olz_A) 0.2333 0.2059 3.2498 ( 0 12 21) 0 0.5134 0.5036 30 34
( 2988 1jmx_B) ( 4869 1p22_A) 0.3333 0.3571 3.8267 ( 0 30 45) 0 0.8977 0.9610 30 28
( 2988 1jmx_B) ( 4969 1pby_B) 0.9666 0.9999 1.7673 ( 4 322 406) 0 0.9666 0.9999 30 29
( 2988 1jmx_B) ( 5009 1pgu_A) 0.4000 0.4285 4.6081 ( 0 50 66) 0 0.8654 0.9268 30 28
( 2988 1jmx_B) ( 5010 1pgu_A) 0.3000 0.3214 3.8340 ( 0 25 36) 0 0.8656 0.9271 30 28
( 2988 1jmx_B) ( 5314 1qfm_A) 0.3000 0.2727 4.1909 ( 0 24 36) 0 0.8950 0.8151 30 33
( 2988 1jmx_B) ( 5640 1ri6_A) 0.4667 0.5000 2.8645 ( 0 68 91) 0 0.8989 0.9627 30 28
( 2988 1jmx_B) ( 5888 1tbg_A) 0.3333 0.3333 3.5519 ( 0 33 45) 0 0.9121 0.9121 30 30
( 2988 1jmx_B) ( 6107 1utc_A) 0.3000 0.3103 5.9852 ( 0 23 36) 0 0.8975 0.9280 30 29
( 2988 1jmx_B) ( 6399 2bbk_H) 0.4524 0.4533 5.3511 ( 50 230 351) 0 0.8654 0.8950 30 29
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