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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 3002 1jof_A) ( 15 1a12_A) 0.3103 0.2903 3.9492 ( 0 16 36) 0 0.8958 0.8382 29 31
( 3002 1jof_A) ( 1250 1erj_A) 0.3448 0.3333 2.7857 ( 0 29 45) 0 0.9986 0.9655 29 30
( 3002 1jof_A) ( 1643 1fwx_A) 0.9645 0.7565 4.2092 ( 1 261 378) 0 0.9974 0.7830 29 37
( 3002 1jof_A) ( 2000 1gxr_A) 0.4138 0.3871 3.0112 ( 0 43 66) 0 0.9652 0.9030 29 31
( 3002 1jof_A) ( 2988 1jmx_B) 0.9293 0.8986 5.0282 ( 2 250 351) 0 0.9296 0.8988 29 30
( 3002 1jof_A) ( 3002 1jof_A) 1.0000 1.0000 0.0000 ( 0 307 406) 0 1.0000 1.0000 29 29
( 3002 1jof_A) ( 3055 1jtd_B) 0.2759 0.3809 3.8784 ( 0 6 28) 0 0.7240 0.9995 29 21
( 3002 1jof_A) ( 3148 1k32_A) 0.3448 0.3333 3.6838 ( 0 31 45) 0 0.8959 0.8661 29 30
( 3002 1jof_A) ( 3158 1k3i_A) 0.3448 0.3448 3.8561 ( 0 25 45) 0 0.9646 0.9646 29 29
( 3002 1jof_A) ( 3211 1k8k_C) 0.4138 0.3871 3.0739 ( 0 47 66) 0 0.9650 0.9028 29 31
( 3002 1jof_A) ( 3506 1l0q_A) 0.9651 0.9995 3.3949 ( 0 265 378) 0 0.9651 0.9995 29 28
( 3002 1jof_A) ( 3790 1m1x_A) 0.2759 0.2500 3.9868 ( 0 15 28) 0 0.8962 0.8123 29 32
( 3002 1jof_A) ( 3908 1mda_H) 0.9295 0.8699 4.8685 ( 0 235 351) 0 0.9297 0.8700 29 31
( 3002 1jof_A) ( 4223 1nex_B) 0.3793 0.3437 3.4705 ( 0 34 55) 0 0.7940 0.7554 29 32
( 3002 1jof_A) ( 4359 1nr0_A) 0.3103 0.3462 3.0585 ( 0 18 36) 0 0.8619 0.9612 29 26
( 3002 1jof_A) ( 4360 1nr0_A) 0.3793 0.3929 3.7188 ( 0 30 55) 0 0.8963 0.9283 29 28
( 3002 1jof_A) ( 4706 1olz_A) 0.3793 0.3235 3.1466 ( 0 27 55) 0 0.9295 0.7934 29 34
( 3002 1jof_A) ( 4869 1p22_A) 0.3793 0.3929 3.3243 ( 0 34 55) 0 0.9307 0.9639 29 28
( 3002 1jof_A) ( 4969 1pby_B) 0.9299 0.9299 4.5579 ( 1 252 351) 0 0.9299 0.9299 29 29
( 3002 1jof_A) ( 5009 1pgu_A) 0.3103 0.3214 3.5500 ( 0 15 36) 0 0.9305 0.9636 29 28
( 3002 1jof_A) ( 5010 1pgu_A) 0.3448 0.3571 3.8272 ( 0 25 45) 0 0.9305 0.9637 29 28
( 3002 1jof_A) ( 5314 1qfm_A) 0.3103 0.2727 3.9238 ( 0 23 36) 0 0.9634 0.8474 29 33
( 3002 1jof_A) ( 5640 1ri6_A) 0.5517 0.5714 2.7679 ( 0 88 120) 0 0.9652 0.9996 29 28
( 3002 1jof_A) ( 5888 1tbg_A) 0.3793 0.3667 3.3606 ( 0 36 55) 0 0.9651 0.9330 29 30
( 3002 1jof_A) ( 6107 1utc_A) 0.3448 0.3448 5.0033 ( 0 27 45) 0 0.9295 0.9295 29 29
( 3002 1jof_A) ( 6399 2bbk_H) 0.3103 0.3103 4.8911 ( 0 25 36) 0 0.9297 0.9297 29 29
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