-------------------------------------------------------------------------------------------------------------------------

Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

-------------------------------------------------------------------------------------------------------------------------
( 3506 1l0q_A)  (   15 1a12_A)     0.2857   0.2581   3.2648 (   0    8   28)   0     0.8925   0.8063   28  31
( 3506 1l0q_A)  ( 1250 1erj_A)     0.9285   0.8666   2.1089 (   0  234  325)   0     0.9997   0.9331   28  30
( 3506 1l0q_A)  ( 1643 1fwx_A)     0.9994   0.7566   3.5051 (   0  260  378)   0     0.9995   0.7566   28  37
( 3506 1l0q_A)  ( 2000 1gxr_A)     0.9285   0.8387   2.1103 (   0  229  325)   0     0.9997   0.9031   28  31
( 3506 1l0q_A)  ( 2988 1jmx_B)     0.9634   0.8994   4.0757 (   2  254  351)   0     0.9634   0.8994   28  30
( 3506 1l0q_A)  ( 3002 1jof_A)     0.9995   0.9651   3.3949 (   0  265  378)   0     0.9995   0.9651   28  29
( 3506 1l0q_A)  ( 3055 1jtd_B)     0.2857   0.3809   3.4143 (   0   12   28)   0     0.7499   0.9996   28  21
( 3506 1l0q_A)  ( 3148 1k32_A)     0.4286   0.4000   2.5524 (   0   40   66)   0     0.8235   0.7874   28  30
( 3506 1l0q_A)  ( 3158 1k3i_A)     0.3571   0.3448   4.5705 (   0   30   45)   0     0.9989   0.9646   28  29
( 3506 1l0q_A)  ( 3211 1k8k_C)     0.5357   0.4839   3.3549 (   0   68  105)   0     0.9991   0.9027   28  31
( 3506 1l0q_A)  ( 3506 1l0q_A)     1.0000   1.0000   0.0000 (   0  281  378)   0     1.0000   1.0000   28  28
( 3506 1l0q_A)  ( 3790 1m1x_A)     0.2500   0.2187   3.4254 (   0   12   21)   0     0.9284   0.8124   28  32
( 3506 1l0q_A)  ( 3908 1mda_H)     0.3929   0.3548   3.4011 (   0   36   55)   0     0.9632   0.8703   28  31
( 3506 1l0q_A)  ( 4223 1nex_B)     0.6071   0.5312   2.3284 (   0   67  136)   0     0.6071   0.5499   28  32
( 3506 1l0q_A)  ( 4359 1nr0_A)     0.8928   0.9615   2.1769 (   0  199  300)   0     0.8928   0.9615   28  26
( 3506 1l0q_A)  ( 4360 1nr0_A)     0.8571   0.8571   2.3209 (   0  183  276)   0     0.9282   0.9282   28  28
( 3506 1l0q_A)  ( 4706 1olz_A)     0.9281   0.7645   3.6766 (   0  203  325)   1     0.9281   0.7645   28  34
( 3506 1l0q_A)  ( 4869 1p22_A)     0.9285   0.9285   2.2908 (   0  232  325)   0     0.9642   0.9642   28  28
( 3506 1l0q_A)  ( 4969 1pby_B)     0.9637   0.9305   3.7529 (   1  256  351)   0     0.9637   0.9305   28  29
( 3506 1l0q_A)  ( 5009 1pgu_A)     0.5000   0.5000   3.6521 (   0   63   91)   0     0.9640   0.9640   28  28
( 3506 1l0q_A)  ( 5010 1pgu_A)     0.6785   0.6785   2.6753 (   0  116  171)   0     0.9641   0.9641   28  28
( 3506 1l0q_A)  ( 5314 1qfm_A)     0.2500   0.2121   3.3356 (   0   15   21)   0     0.9976   0.8474   28  33
( 3506 1l0q_A)  ( 5640 1ri6_A)     0.5000   0.5000   2.5277 (   0   65   91)   0     0.9641   0.9641   28  28
( 3506 1l0q_A)  ( 5888 1tbg_A)     0.8928   0.8333   1.6744 (   0  219  300)   0     0.9999   0.9332   28  30
( 3506 1l0q_A)  ( 6107 1utc_A)     0.5000   0.4827   3.7510 (   0   65   91)   0     0.9623   0.9294   28  29
( 3506 1l0q_A)  ( 6399 2bbk_H)     0.3929   0.3793   3.0587 (   0   31   55)   0     0.9630   0.9300   28  29

-------------------------------------------------------------------------------------------------------------------------