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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 4223 1nex_B) ( 15 1a12_A) 0.2500 0.2581 3.7000 ( 0 6 28) 0 0.7995 0.8235 32 31
( 4223 1nex_B) ( 1250 1erj_A) 0.5625 0.6000 2.3349 ( 0 81 153) 0 0.8314 0.8636 32 30
( 4223 1nex_B) ( 1643 1fwx_A) 0.2812 0.2432 3.9652 ( 0 19 36) 0 0.8537 0.7567 32 37
( 4223 1nex_B) ( 2000 1gxr_A) 0.5937 0.6129 2.8598 ( 0 111 171) 0 0.5937 0.6129 32 31
( 4223 1nex_B) ( 2988 1jmx_B) 0.3125 0.3333 3.4597 ( 0 32 45) 0 0.8118 0.8657 32 30
( 4223 1nex_B) ( 3002 1jof_A) 0.3437 0.3793 3.4705 ( 0 34 55) 0 0.5867 0.5954 32 29
( 4223 1nex_B) ( 3055 1jtd_B) 0.2812 0.4286 2.3146 ( 0 8 36) 0 0.6562 0.9993 32 21
( 4223 1nex_B) ( 3148 1k32_A) 0.7395 0.7716 3.8050 ( 18 178 325) 0 0.7734 0.8226 32 30
( 4223 1nex_B) ( 3158 1k3i_A) 0.3437 0.3793 4.0336 ( 0 35 55) 0 0.8741 0.9640 32 29
( 4223 1nex_B) ( 3211 1k8k_C) 0.5000 0.5161 3.4482 ( 0 81 120) 0 0.5688 0.5718 32 31
( 4223 1nex_B) ( 3506 1l0q_A) 0.5312 0.6071 2.3284 ( 0 67 136) 0 0.5499 0.6071 32 28
( 4223 1nex_B) ( 3790 1m1x_A) 0.2500 0.2500 3.7617 ( 0 14 28) 0 0.7045 0.7045 32 32
( 4223 1nex_B) ( 3908 1mda_H) 0.3437 0.3548 3.4560 ( 0 41 55) 0 0.6342 0.6395 32 31
( 4223 1nex_B) ( 4223 1nex_B) 1.0000 1.0000 0.0000 ( 0 344 496) 0 1.0000 1.0000 32 32
( 4223 1nex_B) ( 4359 1nr0_A) 0.5937 0.7307 2.5846 ( 0 112 171) 0 0.7172 0.8151 32 26
( 4223 1nex_B) ( 4360 1nr0_A) 0.5312 0.6071 2.9458 ( 0 63 136) 0 0.8122 0.9280 32 28
( 4223 1nex_B) ( 4706 1olz_A) 0.7809 0.7350 4.1572 ( 0 163 300) 0 0.7809 0.7350 32 34
( 4223 1nex_B) ( 4869 1p22_A) 0.7592 0.8217 3.3143 ( 23 228 351) 0 0.7592 0.8217 32 28
( 4223 1nex_B) ( 4969 1pby_B) 0.3125 0.3448 3.1724 ( 0 33 45) 0 0.7294 0.7669 32 29
( 4223 1nex_B) ( 5009 1pgu_A) 0.7804 0.8419 4.4331 ( 25 251 378) 0 0.7804 0.8419 32 28
( 4223 1nex_B) ( 5010 1pgu_A) 0.8435 0.9639 3.3813 ( 0 218 351) 0 0.8435 0.9639 32 28
( 4223 1nex_B) ( 5314 1qfm_A) 0.3125 0.3030 3.9199 ( 0 31 45) 0 0.7444 0.7303 32 33
( 4223 1nex_B) ( 5640 1ri6_A) 0.4687 0.5357 3.4501 ( 0 74 105) 0 0.7482 0.7965 32 28
( 4223 1nex_B) ( 5888 1tbg_A) 0.5312 0.5667 2.4192 ( 0 68 136) 0 0.7759 0.8059 32 30
( 4223 1nex_B) ( 6107 1utc_A) 0.3750 0.4138 3.9906 ( 0 44 66) 0 0.8429 0.9296 32 29
( 4223 1nex_B) ( 6399 2bbk_H) 0.3125 0.3448 3.5945 ( 0 11 45) 0 0.8430 0.9298 32 29
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