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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4223 1nex_B)  (   15 1a12_A)     0.2500   0.2581   3.7000 (   0    6   28)   0     0.7995   0.8235   32  31
( 4223 1nex_B)  ( 1250 1erj_A)     0.5625   0.6000   2.3349 (   0   81  153)   0     0.8314   0.8636   32  30
( 4223 1nex_B)  ( 1643 1fwx_A)     0.2812   0.2432   3.9652 (   0   19   36)   0     0.8537   0.7567   32  37
( 4223 1nex_B)  ( 2000 1gxr_A)     0.5937   0.6129   2.8598 (   0  111  171)   0     0.5937   0.6129   32  31
( 4223 1nex_B)  ( 2988 1jmx_B)     0.3125   0.3333   3.4597 (   0   32   45)   0     0.8118   0.8657   32  30
( 4223 1nex_B)  ( 3002 1jof_A)     0.3437   0.3793   3.4705 (   0   34   55)   0     0.5867   0.5954   32  29
( 4223 1nex_B)  ( 3055 1jtd_B)     0.2812   0.4286   2.3146 (   0    8   36)   0     0.6562   0.9993   32  21
( 4223 1nex_B)  ( 3148 1k32_A)     0.7395   0.7716   3.8050 (  18  178  325)   0     0.7734   0.8226   32  30
( 4223 1nex_B)  ( 3158 1k3i_A)     0.3437   0.3793   4.0336 (   0   35   55)   0     0.8741   0.9640   32  29
( 4223 1nex_B)  ( 3211 1k8k_C)     0.5000   0.5161   3.4482 (   0   81  120)   0     0.5688   0.5718   32  31
( 4223 1nex_B)  ( 3506 1l0q_A)     0.5312   0.6071   2.3284 (   0   67  136)   0     0.5499   0.6071   32  28
( 4223 1nex_B)  ( 3790 1m1x_A)     0.2500   0.2500   3.7617 (   0   14   28)   0     0.7045   0.7045   32  32
( 4223 1nex_B)  ( 3908 1mda_H)     0.3437   0.3548   3.4560 (   0   41   55)   0     0.6342   0.6395   32  31
( 4223 1nex_B)  ( 4223 1nex_B)     1.0000   1.0000   0.0000 (   0  344  496)   0     1.0000   1.0000   32  32
( 4223 1nex_B)  ( 4359 1nr0_A)     0.5937   0.7307   2.5846 (   0  112  171)   0     0.7172   0.8151   32  26
( 4223 1nex_B)  ( 4360 1nr0_A)     0.5312   0.6071   2.9458 (   0   63  136)   0     0.8122   0.9280   32  28
( 4223 1nex_B)  ( 4706 1olz_A)     0.7809   0.7350   4.1572 (   0  163  300)   0     0.7809   0.7350   32  34
( 4223 1nex_B)  ( 4869 1p22_A)     0.7592   0.8217   3.3143 (  23  228  351)   0     0.7592   0.8217   32  28
( 4223 1nex_B)  ( 4969 1pby_B)     0.3125   0.3448   3.1724 (   0   33   45)   0     0.7294   0.7669   32  29
( 4223 1nex_B)  ( 5009 1pgu_A)     0.7804   0.8419   4.4331 (  25  251  378)   0     0.7804   0.8419   32  28
( 4223 1nex_B)  ( 5010 1pgu_A)     0.8435   0.9639   3.3813 (   0  218  351)   0     0.8435   0.9639   32  28
( 4223 1nex_B)  ( 5314 1qfm_A)     0.3125   0.3030   3.9199 (   0   31   45)   0     0.7444   0.7303   32  33
( 4223 1nex_B)  ( 5640 1ri6_A)     0.4687   0.5357   3.4501 (   0   74  105)   0     0.7482   0.7965   32  28
( 4223 1nex_B)  ( 5888 1tbg_A)     0.5312   0.5667   2.4192 (   0   68  136)   0     0.7759   0.8059   32  30
( 4223 1nex_B)  ( 6107 1utc_A)     0.3750   0.4138   3.9906 (   0   44   66)   0     0.8429   0.9296   32  29
( 4223 1nex_B)  ( 6399 2bbk_H)     0.3125   0.3448   3.5945 (   0   11   45)   0     0.8430   0.9298   32  29

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