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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 4360 1nr0_A) ( 15 1a12_A) 0.2857 0.2581 3.8532 ( 0 9 28) 0 0.9279 0.8383 28 31
( 4360 1nr0_A) ( 1250 1erj_A) 0.9284 0.8666 2.7009 ( 0 221 325) 0 0.9285 0.8666 28 30
( 4360 1nr0_A) ( 1643 1fwx_A) 0.2857 0.2162 4.7730 ( 0 18 28) 0 0.9630 0.7294 28 37
( 4360 1nr0_A) ( 2000 1gxr_A) 0.9284 0.8386 2.9064 ( 0 216 325) 0 0.9285 0.8387 28 31
( 4360 1nr0_A) ( 2988 1jmx_B) 0.3214 0.3000 3.1572 ( 0 26 36) 0 0.7505 0.7270 28 30
( 4360 1nr0_A) ( 3002 1jof_A) 0.3928 0.3793 4.1633 ( 0 30 55) 0 0.9283 0.8963 28 29
( 4360 1nr0_A) ( 3055 1jtd_B) 0.3214 0.4286 3.2061 ( 0 11 36) 0 0.7500 0.9998 28 21
( 4360 1nr0_A) ( 3148 1k32_A) 0.9276 0.8660 4.4138 ( 1 190 325) 0 0.9276 0.8660 28 30
( 4360 1nr0_A) ( 3158 1k3i_A) 0.8921 0.8614 4.3669 ( 0 200 300) 0 0.9280 0.8961 28 29
( 4360 1nr0_A) ( 3211 1k8k_C) 0.9281 0.8384 3.6135 ( 1 213 325) 0 0.9638 0.8706 28 31
( 4360 1nr0_A) ( 3506 1l0q_A) 0.8571 0.8571 2.3209 ( 0 183 276) 0 0.9282 0.9282 28 28
( 4360 1nr0_A) ( 3790 1m1x_A) 0.2857 0.2500 3.7573 ( 0 15 28) 0 0.8924 0.7810 28 32
( 4360 1nr0_A) ( 3908 1mda_H) 0.3571 0.3226 3.6380 ( 0 25 45) 0 0.9272 0.8379 28 31
( 4360 1nr0_A) ( 4223 1nex_B) 0.6071 0.5312 2.9458 ( 0 63 136) 0 0.9171 0.8066 28 32
( 4360 1nr0_A) ( 4359 1nr0_A) 0.6428 0.6923 2.4980 ( 0 103 153) 0 0.8925 0.9611 28 26
( 4360 1nr0_A) ( 4360 1nr0_A) 1.0000 1.0000 0.0000 ( 0 270 378) 0 1.0000 1.0000 28 28
( 4360 1nr0_A) ( 4706 1olz_A) 0.8567 0.7057 3.9188 ( 0 162 276) 0 0.8920 0.7350 28 34
( 4360 1nr0_A) ( 4869 1p22_A) 0.9284 0.9284 2.6812 ( 0 221 325) 0 0.9284 0.9284 28 28
( 4360 1nr0_A) ( 4969 1pby_B) 0.3571 0.3448 3.2009 ( 0 31 45) 0 0.7714 0.7581 28 29
( 4360 1nr0_A) ( 5009 1pgu_A) 0.9631 0.9631 4.2486 ( 4 233 351) 0 0.9631 0.9631 28 28
( 4360 1nr0_A) ( 5010 1pgu_A) 0.9642 0.9642 2.2955 ( 0 235 351) 0 0.9642 0.9642 28 28
( 4360 1nr0_A) ( 5314 1qfm_A) 0.9263 0.7869 5.1287 ( 4 178 325) 0 0.9270 0.7872 28 33
( 4360 1nr0_A) ( 5640 1ri6_A) 0.4286 0.4286 3.2025 ( 0 46 66) 0 0.5096 0.5096 28 28
( 4360 1nr0_A) ( 5888 1tbg_A) 0.9285 0.8666 2.3630 ( 0 219 325) 0 0.9285 0.8666 28 30
( 4360 1nr0_A) ( 6107 1utc_A) 0.4286 0.4138 4.2529 ( 0 44 66) 0 0.4899 0.4884 28 29
( 4360 1nr0_A) ( 6399 2bbk_H) 0.3928 0.3793 4.4187 ( 0 31 55) 0 0.9273 0.8955 28 29
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