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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4360 1nr0_A)  (   15 1a12_A)     0.2857   0.2581   3.8532 (   0    9   28)   0     0.9279   0.8383   28  31
( 4360 1nr0_A)  ( 1250 1erj_A)     0.9284   0.8666   2.7009 (   0  221  325)   0     0.9285   0.8666   28  30
( 4360 1nr0_A)  ( 1643 1fwx_A)     0.2857   0.2162   4.7730 (   0   18   28)   0     0.9630   0.7294   28  37
( 4360 1nr0_A)  ( 2000 1gxr_A)     0.9284   0.8386   2.9064 (   0  216  325)   0     0.9285   0.8387   28  31
( 4360 1nr0_A)  ( 2988 1jmx_B)     0.3214   0.3000   3.1572 (   0   26   36)   0     0.7505   0.7270   28  30
( 4360 1nr0_A)  ( 3002 1jof_A)     0.3928   0.3793   4.1633 (   0   30   55)   0     0.9283   0.8963   28  29
( 4360 1nr0_A)  ( 3055 1jtd_B)     0.3214   0.4286   3.2061 (   0   11   36)   0     0.7500   0.9998   28  21
( 4360 1nr0_A)  ( 3148 1k32_A)     0.9276   0.8660   4.4138 (   1  190  325)   0     0.9276   0.8660   28  30
( 4360 1nr0_A)  ( 3158 1k3i_A)     0.8921   0.8614   4.3669 (   0  200  300)   0     0.9280   0.8961   28  29
( 4360 1nr0_A)  ( 3211 1k8k_C)     0.9281   0.8384   3.6135 (   1  213  325)   0     0.9638   0.8706   28  31
( 4360 1nr0_A)  ( 3506 1l0q_A)     0.8571   0.8571   2.3209 (   0  183  276)   0     0.9282   0.9282   28  28
( 4360 1nr0_A)  ( 3790 1m1x_A)     0.2857   0.2500   3.7573 (   0   15   28)   0     0.8924   0.7810   28  32
( 4360 1nr0_A)  ( 3908 1mda_H)     0.3571   0.3226   3.6380 (   0   25   45)   0     0.9272   0.8379   28  31
( 4360 1nr0_A)  ( 4223 1nex_B)     0.6071   0.5312   2.9458 (   0   63  136)   0     0.9171   0.8066   28  32
( 4360 1nr0_A)  ( 4359 1nr0_A)     0.6428   0.6923   2.4980 (   0  103  153)   0     0.8925   0.9611   28  26
( 4360 1nr0_A)  ( 4360 1nr0_A)     1.0000   1.0000   0.0000 (   0  270  378)   0     1.0000   1.0000   28  28
( 4360 1nr0_A)  ( 4706 1olz_A)     0.8567   0.7057   3.9188 (   0  162  276)   0     0.8920   0.7350   28  34
( 4360 1nr0_A)  ( 4869 1p22_A)     0.9284   0.9284   2.6812 (   0  221  325)   0     0.9284   0.9284   28  28
( 4360 1nr0_A)  ( 4969 1pby_B)     0.3571   0.3448   3.2009 (   0   31   45)   0     0.7714   0.7581   28  29
( 4360 1nr0_A)  ( 5009 1pgu_A)     0.9631   0.9631   4.2486 (   4  233  351)   0     0.9631   0.9631   28  28
( 4360 1nr0_A)  ( 5010 1pgu_A)     0.9642   0.9642   2.2955 (   0  235  351)   0     0.9642   0.9642   28  28
( 4360 1nr0_A)  ( 5314 1qfm_A)     0.9263   0.7869   5.1287 (   4  178  325)   0     0.9270   0.7872   28  33
( 4360 1nr0_A)  ( 5640 1ri6_A)     0.4286   0.4286   3.2025 (   0   46   66)   0     0.5096   0.5096   28  28
( 4360 1nr0_A)  ( 5888 1tbg_A)     0.9285   0.8666   2.3630 (   0  219  325)   0     0.9285   0.8666   28  30
( 4360 1nr0_A)  ( 6107 1utc_A)     0.4286   0.4138   4.2529 (   0   44   66)   0     0.4899   0.4884   28  29
( 4360 1nr0_A)  ( 6399 2bbk_H)     0.3928   0.3793   4.4187 (   0   31   55)   0     0.9273   0.8955   28  29

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