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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5314 1qfm_A)  (   15 1a12_A)     0.2727   0.2903   3.2105 (   0   19   36)   0     0.7821   0.8308   33  31
( 5314 1qfm_A)  ( 1250 1erj_A)     0.2727   0.3000   3.6905 (   0   24   36)   0     0.8477   0.9320   33  30
( 5314 1qfm_A)  ( 1643 1fwx_A)     0.2424   0.2162   4.5620 (   0   16   28)   0     0.8468   0.7558   33  37
( 5314 1qfm_A)  ( 2000 1gxr_A)     0.2424   0.2581   4.4765 (   0   15   28)   0     0.8476   0.9020   33  31
( 5314 1qfm_A)  ( 2988 1jmx_B)     0.2727   0.3000   4.1909 (   0   24   36)   0     0.8136   0.8927   33  30
( 5314 1qfm_A)  ( 3002 1jof_A)     0.2424   0.2759   3.6639 (   0   15   28)   0     0.8474   0.9634   33  29
( 5314 1qfm_A)  ( 3055 1jtd_B)     0.2121   0.3333   3.7314 (   0    6   21)   0     0.6262   0.9181   33  21
( 5314 1qfm_A)  ( 3148 1k32_A)     0.7547   0.8288   4.2927 (   8  178  300)   0     0.7796   0.8535   33  30
( 5314 1qfm_A)  ( 3158 1k3i_A)     0.2424   0.2759   4.6590 (   0   19   28)   0     0.8457   0.9602   33  29
( 5314 1qfm_A)  ( 3211 1k8k_C)     0.7866   0.8370   5.7295 (   3  197  325)   0     0.8458   0.8996   33  31
( 5314 1qfm_A)  ( 3506 1l0q_A)     0.2424   0.2857   3.5660 (   1   19   28)   0     0.8474   0.9976   33  28
( 5314 1qfm_A)  ( 3790 1m1x_A)     0.2424   0.2500   3.8196 (   0   21   28)   0     0.7874   0.8119   33  32
( 5314 1qfm_A)  ( 3908 1mda_H)     0.2727   0.2903   3.9550 (   0   25   36)   0     0.8152   0.8669   33  31
( 5314 1qfm_A)  ( 4223 1nex_B)     0.3030   0.3125   3.9199 (   0   31   45)   0     0.7303   0.7444   33  32
( 5314 1qfm_A)  ( 4359 1nr0_A)     0.7573   0.9605   4.2309 (   2  168  300)   0     0.7573   0.9605   33  26
( 5314 1qfm_A)  ( 4360 1nr0_A)     0.7869   0.9263   5.1287 (   4  178  325)   0     0.7872   0.9270   33  28
( 5314 1qfm_A)  ( 4706 1olz_A)     0.2424   0.2353   3.7471 (   0   10   28)   0     0.7242   0.7032   33  34
( 5314 1qfm_A)  ( 4869 1p22_A)     0.4053   0.4088   5.1547 (  47  194  325)   0     0.8157   0.9587   33  28
( 5314 1qfm_A)  ( 4969 1pby_B)     0.2424   0.2759   3.4232 (   0   18   28)   0     0.8429   0.9551   33  29
( 5314 1qfm_A)  ( 5009 1pgu_A)     0.8163   0.9599   4.7524 (   7  206  351)   0     0.8172   0.9622   33  28
( 5314 1qfm_A)  ( 5010 1pgu_A)     0.8173   0.9624   4.9494 (   2  202  351)   0     0.8176   0.9629   33  28
( 5314 1qfm_A)  ( 5314 1qfm_A)     1.0000   1.0000   0.0000 (   0  410  528)   0     1.0000   1.0000   33  33
( 5314 1qfm_A)  ( 5640 1ri6_A)     0.3030   0.3571   3.3040 (   0   35   45)   0     0.8172   0.9620   33  28
( 5314 1qfm_A)  ( 5888 1tbg_A)     0.2121   0.2333   3.2013 (   0   12   21)   0     0.8473   0.9314   33  30
( 5314 1qfm_A)  ( 6107 1utc_A)     0.3030   0.3448   4.4938 (   0   29   45)   0     0.8167   0.9283   33  29
( 5314 1qfm_A)  ( 6399 2bbk_H)     0.3030   0.3448   3.8406 (   0   31   45)   0     0.8161   0.9270   33  29

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