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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 5314 1qfm_A) ( 15 1a12_A) 0.2727 0.2903 3.2105 ( 0 19 36) 0 0.7821 0.8308 33 31
( 5314 1qfm_A) ( 1250 1erj_A) 0.2727 0.3000 3.6905 ( 0 24 36) 0 0.8477 0.9320 33 30
( 5314 1qfm_A) ( 1643 1fwx_A) 0.2424 0.2162 4.5620 ( 0 16 28) 0 0.8468 0.7558 33 37
( 5314 1qfm_A) ( 2000 1gxr_A) 0.2424 0.2581 4.4765 ( 0 15 28) 0 0.8476 0.9020 33 31
( 5314 1qfm_A) ( 2988 1jmx_B) 0.2727 0.3000 4.1909 ( 0 24 36) 0 0.8136 0.8927 33 30
( 5314 1qfm_A) ( 3002 1jof_A) 0.2424 0.2759 3.6639 ( 0 15 28) 0 0.8474 0.9634 33 29
( 5314 1qfm_A) ( 3055 1jtd_B) 0.2121 0.3333 3.7314 ( 0 6 21) 0 0.6262 0.9181 33 21
( 5314 1qfm_A) ( 3148 1k32_A) 0.7547 0.8288 4.2927 ( 8 178 300) 0 0.7796 0.8535 33 30
( 5314 1qfm_A) ( 3158 1k3i_A) 0.2424 0.2759 4.6590 ( 0 19 28) 0 0.8457 0.9602 33 29
( 5314 1qfm_A) ( 3211 1k8k_C) 0.7866 0.8370 5.7295 ( 3 197 325) 0 0.8458 0.8996 33 31
( 5314 1qfm_A) ( 3506 1l0q_A) 0.2424 0.2857 3.5660 ( 1 19 28) 0 0.8474 0.9976 33 28
( 5314 1qfm_A) ( 3790 1m1x_A) 0.2424 0.2500 3.8196 ( 0 21 28) 0 0.7874 0.8119 33 32
( 5314 1qfm_A) ( 3908 1mda_H) 0.2727 0.2903 3.9550 ( 0 25 36) 0 0.8152 0.8669 33 31
( 5314 1qfm_A) ( 4223 1nex_B) 0.3030 0.3125 3.9199 ( 0 31 45) 0 0.7303 0.7444 33 32
( 5314 1qfm_A) ( 4359 1nr0_A) 0.7573 0.9605 4.2309 ( 2 168 300) 0 0.7573 0.9605 33 26
( 5314 1qfm_A) ( 4360 1nr0_A) 0.7869 0.9263 5.1287 ( 4 178 325) 0 0.7872 0.9270 33 28
( 5314 1qfm_A) ( 4706 1olz_A) 0.2424 0.2353 3.7471 ( 0 10 28) 0 0.7242 0.7032 33 34
( 5314 1qfm_A) ( 4869 1p22_A) 0.4053 0.4088 5.1547 ( 47 194 325) 0 0.8157 0.9587 33 28
( 5314 1qfm_A) ( 4969 1pby_B) 0.2424 0.2759 3.4232 ( 0 18 28) 0 0.8429 0.9551 33 29
( 5314 1qfm_A) ( 5009 1pgu_A) 0.8163 0.9599 4.7524 ( 7 206 351) 0 0.8172 0.9622 33 28
( 5314 1qfm_A) ( 5010 1pgu_A) 0.8173 0.9624 4.9494 ( 2 202 351) 0 0.8176 0.9629 33 28
( 5314 1qfm_A) ( 5314 1qfm_A) 1.0000 1.0000 0.0000 ( 0 410 528) 0 1.0000 1.0000 33 33
( 5314 1qfm_A) ( 5640 1ri6_A) 0.3030 0.3571 3.3040 ( 0 35 45) 0 0.8172 0.9620 33 28
( 5314 1qfm_A) ( 5888 1tbg_A) 0.2121 0.2333 3.2013 ( 0 12 21) 0 0.8473 0.9314 33 30
( 5314 1qfm_A) ( 6107 1utc_A) 0.3030 0.3448 4.4938 ( 0 29 45) 0 0.8167 0.9283 33 29
( 5314 1qfm_A) ( 6399 2bbk_H) 0.3030 0.3448 3.8406 ( 0 31 45) 0 0.8161 0.9270 33 29
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