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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5640 1ri6_A)  (   15 1a12_A)     0.2857   0.2581   2.2309 (   0   13   28)   0     0.8917   0.8057   28  31
( 5640 1ri6_A)  ( 1250 1erj_A)     0.4643   0.4333   3.1469 (   0   61   78)   0     0.9991   0.9327   28  30
( 5640 1ri6_A)  ( 1643 1fwx_A)     0.9989   0.7565   4.1309 (   1  272  378)   0     0.9989   0.7565   28  37
( 5640 1ri6_A)  ( 2000 1gxr_A)     0.5357   0.4839   3.0664 (   0   73  105)   0     0.9641   0.8709   28  31
( 5640 1ri6_A)  ( 2988 1jmx_B)     0.5000   0.4667   2.8645 (   0   68   91)   0     0.9627   0.8989   28  30
( 5640 1ri6_A)  ( 3002 1jof_A)     0.5714   0.5517   2.7679 (   0   88  120)   0     0.9996   0.9652   28  29
( 5640 1ri6_A)  ( 3055 1jtd_B)     0.2857   0.3809   3.1106 (   0   11   28)   0     0.6657   0.8553   28  21
( 5640 1ri6_A)  ( 3148 1k32_A)     0.4643   0.4333   3.6297 (   0   53   78)   0     0.8921   0.8328   28  30
( 5640 1ri6_A)  ( 3158 1k3i_A)     0.4643   0.4482   4.4704 (   0   54   78)   0     0.9638   0.9306   28  29
( 5640 1ri6_A)  ( 3211 1k8k_C)     0.7500   0.6774   2.5132 (   0  150  210)   0     0.9637   0.8706   28  31
( 5640 1ri6_A)  ( 3506 1l0q_A)     0.5000   0.5000   2.5277 (   0   65   91)   0     0.9641   0.9641   28  28
( 5640 1ri6_A)  ( 3790 1m1x_A)     0.2857   0.2500   3.3525 (   0   17   28)   0     0.9283   0.8124   28  32
( 5640 1ri6_A)  ( 3908 1mda_H)     0.6070   0.5483   4.2361 (   0  102  136)   0     0.6070   0.5483   28  31
( 5640 1ri6_A)  ( 4223 1nex_B)     0.5000   0.4375   3.4229 (   0   66   91)   0     0.7965   0.7482   28  32
( 5640 1ri6_A)  ( 4359 1nr0_A)     0.5714   0.6154   2.6441 (   0   75  120)   0     0.8925   0.9611   28  26
( 5640 1ri6_A)  ( 4360 1nr0_A)     0.4286   0.4286   2.4928 (   0   39   66)   0     0.5096   0.5096   28  28
( 5640 1ri6_A)  ( 4706 1olz_A)     0.3214   0.2647   6.2941 (   0   24   36)   0     0.5208   0.5085   28  34
( 5640 1ri6_A)  ( 4869 1p22_A)     0.3929   0.3929   3.0802 (   0   40   55)   0     0.9284   0.9284   28  28
( 5640 1ri6_A)  ( 4969 1pby_B)     0.3929   0.3793   3.1952 (   0   39   55)   0     0.9634   0.9303   28  29
( 5640 1ri6_A)  ( 5009 1pgu_A)     0.6785   0.6785   3.5859 (   0  121  171)   0     0.9279   0.9279   28  28
( 5640 1ri6_A)  ( 5010 1pgu_A)     0.4643   0.4643   2.8435 (   0   51   78)   0     0.5438   0.5438   28  28
( 5640 1ri6_A)  ( 5314 1qfm_A)     0.3214   0.2727   3.0696 (   0   26   36)   0     0.9620   0.8172   28  33
( 5640 1ri6_A)  ( 5640 1ri6_A)     1.0000   1.0000   0.0000 (   0  298  378)   0     1.0000   1.0000   28  28
( 5640 1ri6_A)  ( 5888 1tbg_A)     0.5000   0.4667   3.0704 (   0   66   91)   0     0.9641   0.8999   28  30
( 5640 1ri6_A)  ( 6107 1utc_A)     0.4643   0.4483   3.6682 (   0   47   78)   0     0.9623   0.9293   28  29
( 5640 1ri6_A)  ( 6399 2bbk_H)     0.5714   0.5517   3.6445 (   0   82  120)   0     0.9273   0.8996   28  29

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