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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 5888 1tbg_A) ( 15 1a12_A) 0.3000 0.2903 3.1404 ( 0 15 36) 0 0.8663 0.8384 30 31
( 5888 1tbg_A) ( 1250 1erj_A) 0.9332 0.9332 2.3599 ( 0 278 378) 0 0.9333 0.9333 30 30
( 5888 1tbg_A) ( 1643 1fwx_A) 0.2333 0.1892 4.0881 ( 0 11 21) 0 0.9327 0.7641 30 37
( 5888 1tbg_A) ( 2000 1gxr_A) 0.9332 0.9031 2.4350 ( 0 272 378) 0 0.9333 0.9032 30 31
( 5888 1tbg_A) ( 2988 1jmx_B) 0.3333 0.3333 3.5519 ( 0 33 45) 0 0.9121 0.9121 30 30
( 5888 1tbg_A) ( 3002 1jof_A) 0.3333 0.3448 3.1635 ( 0 28 45) 0 0.9330 0.9651 30 29
( 5888 1tbg_A) ( 3055 1jtd_B) 0.2333 0.3333 3.7939 ( 0 5 21) 0 0.7000 0.9999 30 21
( 5888 1tbg_A) ( 3148 1k32_A) 0.8663 0.8663 3.7049 ( 1 194 325) 0 0.8663 0.8663 30 30
( 5888 1tbg_A) ( 3158 1k3i_A) 0.9323 0.9643 4.4207 ( 0 276 378) 0 0.9326 0.9646 30 29
( 5888 1tbg_A) ( 3211 1k8k_C) 0.5000 0.4839 2.5944 ( 0 81 105) 0 0.9329 0.9028 30 31
( 5888 1tbg_A) ( 3506 1l0q_A) 0.8333 0.8928 1.6744 ( 0 219 300) 0 0.9332 0.9999 30 28
( 5888 1tbg_A) ( 3790 1m1x_A) 0.8665 0.8124 2.9103 ( 0 216 325) 0 0.8666 0.8124 30 32
( 5888 1tbg_A) ( 3908 1mda_H) 0.3333 0.3226 3.4201 ( 0 22 45) 0 0.8993 0.8704 30 31
( 5888 1tbg_A) ( 4223 1nex_B) 0.5206 0.5169 3.7293 ( 47 251 378) 0 0.8059 0.7759 30 32
( 5888 1tbg_A) ( 4359 1nr0_A) 0.8333 0.9615 1.9831 ( 0 200 300) 0 0.8333 0.9615 30 26
( 5888 1tbg_A) ( 4360 1nr0_A) 0.8666 0.9285 2.3630 ( 0 219 325) 0 0.8666 0.9285 30 28
( 5888 1tbg_A) ( 4706 1olz_A) 0.2333 0.2059 3.5794 ( 0 6 21) 0 0.8661 0.7644 30 34
( 5888 1tbg_A) ( 4869 1p22_A) 0.8999 0.9642 2.2961 ( 0 249 351) 0 0.9000 0.9642 30 28
( 5888 1tbg_A) ( 4969 1pby_B) 0.2667 0.2759 3.3096 ( 0 23 28) 0 0.8994 0.9303 30 29
( 5888 1tbg_A) ( 5009 1pgu_A) 0.8997 0.9639 3.2972 ( 0 236 351) 0 0.8998 0.9641 30 28
( 5888 1tbg_A) ( 5010 1pgu_A) 0.8999 0.9642 2.5201 ( 0 234 351) 0 0.8999 0.9642 30 28
( 5888 1tbg_A) ( 5314 1qfm_A) 0.2333 0.2121 3.2013 ( 0 12 21) 0 0.9314 0.8473 30 33
( 5888 1tbg_A) ( 5640 1ri6_A) 0.4667 0.5000 3.0704 ( 0 66 91) 0 0.8999 0.9641 30 28
( 5888 1tbg_A) ( 5888 1tbg_A) 1.0000 1.0000 0.0000 ( 0 333 435) 0 1.0000 1.0000 30 30
( 5888 1tbg_A) ( 6107 1utc_A) 0.8981 0.9288 5.3834 ( 0 245 351) 0 0.8986 0.9294 30 29
( 5888 1tbg_A) ( 6399 2bbk_H) 0.2667 0.2759 2.9442 ( 0 19 28) 0 0.8992 0.9301 30 29
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