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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1028 1e43_A)  (  335 1bag  )     0.6666   0.8571   2.6468 (   0   10   15)   0     0.6666   0.8571    9   7
( 1028 1e43_A)  (  367 1bf2  )     0.7777   0.7000   2.5922 (   0   10   21)   0     0.7777   0.7000    9  10
( 1028 1e43_A)  ( 1028 1e43_A)     1.0000   1.0000   0.0000 (   0   28   36)   0     1.0000   1.0000    9   9
( 1028 1e43_A)  ( 1729 1g5a_A)     0.6666   0.8569   3.3652 (   0    9   15)   0     0.6666   0.8569    9   7
( 1028 1e43_A)  ( 1839 1gjw_A)     0.6662   0.8557   5.3930 (   0    6   15)   0     0.6662   0.8557    9   7
( 1028 1e43_A)  ( 2063 1h3g_A)     0.7775   0.7775   3.8978 (   0   14   21)   0     0.7775   0.7775    9   9
( 1028 1e43_A)  ( 2232 1hl9_A)     0.7774   0.7774   4.3206 (   0   14   21)   0     0.7774   0.7774    9   9
( 1028 1e43_A)  ( 2311 1hx0_A)     0.7778   0.8750   1.8984 (   0   10   21)   0     0.7778   0.8750    9   8
( 1028 1e43_A)  ( 2622 1iv8_A)     0.7777   0.8748   3.2013 (   0   11   21)   0     0.7777   0.8748    9   8
( 1028 1e43_A)  ( 2687 1j0h_A)     0.7775   0.8744   4.1406 (   0   12   21)   0     0.7775   0.8744    9   8
( 1028 1e43_A)  ( 2879 1ji1_A)     0.7777   0.7777   3.1218 (   0   11   21)   0     0.7777   0.7777    9   9
( 1028 1e43_A)  ( 2882 1ji2_A)     0.7776   0.8747   3.4766 (   0   14   21)   0     0.7776   0.8747    9   8
( 1028 1e43_A)  ( 3426 1ktb_A)     0.5554   0.6248   4.9422 (   0    5   10)   0     0.7768   0.8733    9   8
( 1028 1e43_A)  ( 3839 1m53_A)     0.7774   0.9987   4.2686 (   0   11   21)   0     0.7774   0.9987    9   7
( 1028 1e43_A)  ( 3878 1m7x_A)     0.7775   0.9990   4.0058 (   0   12   21)   0     0.7775   0.9990    9   7
( 1028 1e43_A)  ( 4072 1mxg_A)     0.6667   0.8571   1.2874 (   0   13   15)   0     0.6667   0.8571    9   7
( 1028 1e43_A)  ( 4335 1nof_A)     0.7777   0.6999   3.0890 (   0   12   21)   0     0.7777   0.6999    9  10
( 1028 1e43_A)  ( 4646 1ogs_A)     0.5555   0.4167   4.2554 (   0    3   10)   0     0.6629   0.5481    9  12
( 1028 1e43_A)  ( 5341 1qho_A)     0.6664   0.7496   4.5946 (   0    7   15)   0     0.7348   0.8031    9   8
( 1028 1e43_A)  ( 5472 1qw9_A)     0.7775   0.6363   4.0386 (   0   10   21)   0     0.7775   0.6363    9  11
( 1028 1e43_A)  ( 5546 1r46_A)     0.7776   0.7776   3.5479 (   0   12   21)   0     0.7776   0.7776    9   9
( 1028 1e43_A)  ( 5953 1uas_A)     0.7777   0.8748   3.0586 (   0   11   21)   0     0.7777   0.8748    9   8
( 1028 1e43_A)  ( 6023 1uhv_A)     0.7777   0.6363   3.0670 (   0    6   21)   0     0.7777   0.6363    9  11
( 1028 1e43_A)  ( 6067 1uok  )     0.7774   0.9986   4.3661 (   0    9   21)   0     0.7774   0.9986    9   7
( 1028 1e43_A)  ( 6644 7taa  )     0.7777   0.7777   2.5966 (   0   15   21)   0     0.7777   0.7777    9   9

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