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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1729 1g5a_A)  (  335 1bag  )     0.9996   0.9996   3.2036 (   0   11   21)   0     0.9996   0.9996    7   7
( 1729 1g5a_A)  (  367 1bf2  )     0.9999   0.7000   2.1049 (   0   12   21)   0     0.9999   0.7000    7  10
( 1729 1g5a_A)  ( 1028 1e43_A)     0.8569   0.6666   3.3652 (   0    9   15)   0     0.8569   0.6666    7   9
( 1729 1g5a_A)  ( 1729 1g5a_A)     1.0000   1.0000   0.0000 (   0   16   21)   0     1.0000   1.0000    7   7
( 1729 1g5a_A)  ( 1839 1gjw_A)     0.5714   0.5714   3.9868 (   0    3    6)   0     0.5714   0.5714    7   7
( 1729 1g5a_A)  ( 2063 1h3g_A)     0.9559   0.7643   2.0309 (   1   15   21)   0     0.9559   0.7643    7   9
( 1729 1g5a_A)  ( 2232 1hl9_A)     0.9993   0.7776   3.6805 (   0   14   21)   0     0.9993   0.7776    7   9
( 1729 1g5a_A)  ( 2311 1hx0_A)     0.9062   0.8222   2.3754 (   1   12   21)   0     0.9990   0.8745    7   8
( 1729 1g5a_A)  ( 2622 1iv8_A)     0.9999   0.8750   1.4619 (   0   14   21)   0     0.9999   0.8750    7   8
( 1729 1g5a_A)  ( 2687 1j0h_A)     0.9276   0.8351   2.1265 (   1   13   21)   0     0.9276   0.8351    7   8
( 1729 1g5a_A)  ( 2879 1ji1_A)     0.9438   0.7603   2.0066 (   1   14   21)   0     0.9438   0.7603    7   9
( 1729 1g5a_A)  ( 2882 1ji2_A)     0.9437   0.8444   2.3379 (   1   14   21)   0     0.9972   0.8736    7   8
( 1729 1g5a_A)  ( 3426 1ktb_A)     0.8571   0.7500   2.4635 (   0    8   15)   0     0.8571   0.7500    7   8
( 1729 1g5a_A)  ( 3839 1m53_A)     0.8571   0.8571   2.5735 (   0    8   15)   0     0.8571   0.8571    7   7
( 1729 1g5a_A)  ( 3878 1m7x_A)     0.8571   0.8571   2.3368 (   0    7   15)   0     0.8571   0.8571    7   7
( 1729 1g5a_A)  ( 4072 1mxg_A)     0.8571   0.8571   2.3860 (   0    9   15)   0     0.8571   0.8571    7   7
( 1729 1g5a_A)  ( 4335 1nof_A)     0.9987   0.6998   4.2848 (   0   11   21)   0     0.9987   0.6998    7  10
( 1729 1g5a_A)  ( 4646 1ogs_A)     0.5712   0.3333   5.6280 (   0    0    6)   0     0.5714   0.4527    7  12
( 1729 1g5a_A)  ( 5341 1qho_A)     0.9061   0.8221   3.0385 (   1   12   21)   0     0.9938   0.8718    7   8
( 1729 1g5a_A)  ( 5472 1qw9_A)     0.7137   0.4545   5.3372 (   0    5   10)   0     0.8403   0.6125    7  11
( 1729 1g5a_A)  ( 5546 1r46_A)     0.9997   0.7777   2.9266 (   0   13   21)   0     0.9997   0.7777    7   9
( 1729 1g5a_A)  ( 5953 1uas_A)     0.9437   0.8444   2.6542 (   1   14   21)   0     0.9437   0.8444    7   8
( 1729 1g5a_A)  ( 6023 1uhv_A)     0.5713   0.3636   4.8426 (   0    0    6)   0     0.5713   0.3857    7  11
( 1729 1g5a_A)  ( 6067 1uok  )     0.8571   0.8571   2.6585 (   0    5   15)   0     0.8571   0.8571    7   7
( 1729 1g5a_A)  ( 6644 7taa  )     0.9651   0.7673   2.0550 (   1   16   21)   0     0.9651   0.7673    7   9

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