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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2232 1hl9_A)  (  335 1bag  )     0.7775   0.9990   4.0458 (   0   14   21)   0     0.7777   0.9997    9   7
( 2232 1hl9_A)  (  367 1bf2  )     0.7776   0.6999   3.6010 (   0   11   21)   0     0.7776   0.6999    9  10
( 2232 1hl9_A)  ( 1028 1e43_A)     0.7774   0.7774   4.3206 (   0   14   21)   0     0.7774   0.7774    9   9
( 2232 1hl9_A)  ( 1729 1g5a_A)     0.7776   0.9993   3.6805 (   0   14   21)   0     0.7776   0.9993    9   7
( 2232 1hl9_A)  ( 1839 1gjw_A)     0.5554   0.7139   4.7906 (   0    4   10)   0     0.5554   0.7139    9   7
( 2232 1hl9_A)  ( 2063 1h3g_A)     0.7777   0.7777   3.1725 (   0   16   21)   0     0.7777   0.7777    9   9
( 2232 1hl9_A)  ( 2232 1hl9_A)     1.0000   1.0000   0.0000 (   0   32   36)   0     1.0000   1.0000    9   9
( 2232 1hl9_A)  ( 2311 1hx0_A)     0.8883   0.9989   4.1675 (   0   16   28)   0     0.8883   0.9989    9   8
( 2232 1hl9_A)  ( 2622 1iv8_A)     0.8880   0.9984   4.5054 (   0   20   28)   0     0.8880   0.9984    9   8
( 2232 1hl9_A)  ( 2687 1j0h_A)     0.8872   0.9969   5.3489 (   0   20   28)   0     0.8872   0.9969    9   8
( 2232 1hl9_A)  ( 2879 1ji1_A)     0.8882   0.8882   4.2628 (   0   19   28)   0     0.8882   0.8882    9   9
( 2232 1hl9_A)  ( 2882 1ji2_A)     0.8885   0.9993   3.7375 (   0   21   28)   0     0.8885   0.9993    9   8
( 2232 1hl9_A)  ( 3426 1ktb_A)     0.7775   0.8744   4.1510 (   0   15   21)   0     0.8764   0.9780    9   8
( 2232 1hl9_A)  ( 3839 1m53_A)     0.7774   0.9988   4.2543 (   0   13   21)   0     0.7774   0.9988    9   7
( 2232 1hl9_A)  ( 3878 1m7x_A)     0.7776   0.9993   3.7225 (   0   13   21)   0     0.7776   0.9993    9   7
( 2232 1hl9_A)  ( 4072 1mxg_A)     0.6666   0.8568   3.7081 (   0   10   15)   0     0.6666   0.8568    9   7
( 2232 1hl9_A)  ( 4335 1nof_A)     0.6664   0.5998   4.8709 (   0   10   15)   0     0.6664   0.5998    9  10
( 2232 1hl9_A)  ( 4646 1ogs_A)     0.5554   0.4166   5.2937 (   0    4   10)   0     0.5554   0.4166    9  12
( 2232 1hl9_A)  ( 5341 1qho_A)     0.7774   0.8742   4.4302 (   0   12   21)   0     0.7774   0.8742    9   8
( 2232 1hl9_A)  ( 5472 1qw9_A)     0.8885   0.7271   3.6517 (   0   17   28)   0     0.8885   0.7271    9  11
( 2232 1hl9_A)  ( 5546 1r46_A)     0.8880   0.8880   4.5354 (   0   21   28)   0     0.8880   0.8880    9   9
( 2232 1hl9_A)  ( 5953 1uas_A)     0.8881   0.9986   4.3551 (   0   19   28)   0     0.8881   0.9986    9   8
( 2232 1hl9_A)  ( 6023 1uhv_A)     0.5555   0.4545   4.4386 (   0    1   10)   0     0.7773   0.6362    9  11
( 2232 1hl9_A)  ( 6067 1uok  )     0.7775   0.9989   4.1581 (   0   11   21)   0     0.7775   0.9989    9   7
( 2232 1hl9_A)  ( 6644 7taa  )     0.8886   0.8886   3.4377 (   0   22   28)   0     0.8886   0.8886    9   9

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