------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2622 1iv8_A) ( 335 1bag ) 0.8748 0.9995 3.3223 ( 0 10 21) 0 0.8748 0.9995 8 7 ( 2622 1iv8_A) ( 367 1bf2 ) 0.9999 0.8000 2.1524 ( 0 18 28) 0 0.9999 0.8000 8 10 ( 2622 1iv8_A) ( 1028 1e43_A) 0.8748 0.7777 3.2013 ( 0 11 21) 0 0.8748 0.7777 8 9 ( 2622 1iv8_A) ( 1729 1g5a_A) 0.8750 0.9999 1.4619 ( 0 14 21) 0 0.8750 0.9999 8 7 ( 2622 1iv8_A) ( 1839 1gjw_A) 0.6797 0.7376 3.0017 ( 1 9 15) 0 0.6797 0.7376 8 7 ( 2622 1iv8_A) ( 2063 1h3g_A) 0.9849 0.8804 2.0918 ( 1 20 28) 0 0.9849 0.8804 8 9 ( 2622 1iv8_A) ( 2232 1hl9_A) 0.9984 0.8880 4.5054 ( 0 20 28) 0 0.9984 0.8880 8 9 ( 2622 1iv8_A) ( 2311 1hx0_A) 0.9557 0.9557 2.8120 ( 1 15 28) 0 0.9986 0.9986 8 8 ( 2622 1iv8_A) ( 2622 1iv8_A) 1.0000 1.0000 0.0000 ( 0 21 28) 0 1.0000 1.0000 8 8 ( 2622 1iv8_A) ( 2687 1j0h_A) 0.9849 0.9849 2.3018 ( 1 20 28) 0 0.9849 0.9849 8 8 ( 2622 1iv8_A) ( 2879 1ji1_A) 0.9847 0.8803 2.8523 ( 1 20 28) 0 0.9847 0.8803 8 9 ( 2622 1iv8_A) ( 2882 1ji2_A) 0.9813 0.9813 3.2019 ( 1 19 28) 0 0.9813 0.9813 8 8 ( 2622 1iv8_A) ( 3426 1ktb_A) 0.8749 0.8749 2.4442 ( 0 13 21) 0 0.8749 0.8749 8 8 ( 2622 1iv8_A) ( 3839 1m53_A) 0.8749 0.9998 2.7509 ( 0 13 21) 0 0.8749 0.9998 8 7 ( 2622 1iv8_A) ( 3878 1m7x_A) 0.8749 0.9997 2.8910 ( 0 11 21) 0 0.8749 0.9997 8 7 ( 2622 1iv8_A) ( 4072 1mxg_A) 0.6239 0.7122 7.4090 ( 0 5 10) 0 0.7488 0.8548 8 7 ( 2622 1iv8_A) ( 4335 1nof_A) 0.9992 0.7997 3.8496 ( 0 17 28) 0 0.9992 0.7997 8 10 ( 2622 1iv8_A) ( 4646 1ogs_A) 0.6248 0.4166 4.9111 ( 0 5 10) 0 0.9712 0.6626 8 12 ( 2622 1iv8_A) ( 5341 1qho_A) 0.7497 0.7497 4.0782 ( 0 8 15) 0 0.8729 0.8729 8 8 ( 2622 1iv8_A) ( 5472 1qw9_A) 0.9993 0.7271 3.7383 ( 0 18 28) 0 0.9993 0.7271 8 11 ( 2622 1iv8_A) ( 5546 1r46_A) 0.9996 0.8886 3.2773 ( 0 20 28) 0 0.9996 0.8886 8 9 ( 2622 1iv8_A) ( 5953 1uas_A) 0.9845 0.9845 3.3111 ( 1 20 28) 0 0.9845 0.9845 8 8 ( 2622 1iv8_A) ( 6023 1uhv_A) 0.9983 0.7269 4.6285 ( 0 11 28) 0 0.9983 0.7269 8 11 ( 2622 1iv8_A) ( 6067 1uok ) 0.8749 0.9997 2.9161 ( 0 11 21) 0 0.8749 0.9997 8 7 ( 2622 1iv8_A) ( 6644 7taa ) 0.9848 0.8804 2.4005 ( 1 20 28) 0 0.9848 0.8804 8 9 -------------------------------------------------------------------------------------------------------------------------