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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2687 1j0h_A)  (  335 1bag  )     0.7497   0.8565   4.3044 (   0    8   15)   0     0.7497   0.8565    8   7
( 2687 1j0h_A)  (  367 1bf2  )     0.9720   0.7904   2.6785 (   1   17   28)   0     0.9720   0.7904    8  10
( 2687 1j0h_A)  ( 1028 1e43_A)     0.8744   0.7775   4.1406 (   0   12   21)   0     0.8744   0.7775    8   9
( 2687 1j0h_A)  ( 1729 1g5a_A)     0.8351   0.9276   2.1265 (   1   13   21)   0     0.8351   0.9276    8   7
( 2687 1j0h_A)  ( 1839 1gjw_A)     0.5707   0.5819   4.3367 (   2   12   21)   0     0.6242   0.7128    8   7
( 2687 1j0h_A)  ( 2063 1h3g_A)     0.9999   0.8888   2.4159 (   0   20   28)   0     0.9999   0.8888    8   9
( 2687 1j0h_A)  ( 2232 1hl9_A)     0.9969   0.8872   5.3489 (   0   20   28)   0     0.9969   0.8872    8   9
( 2687 1j0h_A)  ( 2311 1hx0_A)     0.9991   0.9991   3.8696 (   0   15   28)   0     0.9991   0.9991    8   8
( 2687 1j0h_A)  ( 2622 1iv8_A)     0.9849   0.9849   2.3018 (   1   20   28)   0     0.9849   0.9849    8   8
( 2687 1j0h_A)  ( 2687 1j0h_A)     1.0000   1.0000   0.0000 (   0   21   28)   0     1.0000   1.0000    8   8
( 2687 1j0h_A)  ( 2879 1ji1_A)     0.9996   0.8887   3.2100 (   0   19   28)   0     0.9996   0.8887    8   9
( 2687 1j0h_A)  ( 2882 1ji2_A)     0.9993   0.9993   3.6231 (   0   19   28)   0     0.9993   0.9993    8   8
( 2687 1j0h_A)  ( 3426 1ktb_A)     0.8749   0.8749   2.3607 (   0   14   21)   0     0.8749   0.8749    8   8
( 2687 1j0h_A)  ( 3839 1m53_A)     0.8749   0.9999   2.4643 (   0   13   21)   0     0.8749   0.9999    8   7
( 2687 1j0h_A)  ( 3878 1m7x_A)     0.8749   0.9998   2.6174 (   0   12   21)   0     0.8749   0.9998    8   7
( 2687 1j0h_A)  ( 4072 1mxg_A)     0.7499   0.8570   3.0498 (   0    8   15)   0     0.7499   0.8570    8   7
( 2687 1j0h_A)  ( 4335 1nof_A)     0.9986   0.7996   4.3552 (   0   17   28)   0     0.9986   0.7996    8  10
( 2687 1j0h_A)  ( 4646 1ogs_A)     0.6247   0.4166   5.4364 (   0    5   10)   0     0.6994   0.5902    8  12
( 2687 1j0h_A)  ( 5341 1qho_A)     0.8749   0.8749   2.7363 (   0   11   21)   0     0.8749   0.8749    8   8
( 2687 1j0h_A)  ( 5472 1qw9_A)     0.8747   0.6363   3.6255 (   0   12   21)   0     0.8747   0.6363    8  11
( 2687 1j0h_A)  ( 5546 1r46_A)     0.9846   0.8802   3.2011 (   1   20   28)   0     0.9846   0.8802    8   9
( 2687 1j0h_A)  ( 5953 1uas_A)     0.9996   0.9996   3.2171 (   0   19   28)   0     0.9996   0.9996    8   8
( 2687 1j0h_A)  ( 6023 1uhv_A)     0.9983   0.7269   4.6059 (   0   11   28)   0     0.9983   0.7269    8  11
( 2687 1j0h_A)  ( 6067 1uok  )     0.8749   0.9999   2.4736 (   0   11   21)   0     0.8749   0.9999    8   7
( 2687 1j0h_A)  ( 6644 7taa  )     0.9995   0.8886   3.3398 (   0   20   28)   0     0.9995   0.8886    8   9

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