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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2879 1ji1_A)  (  335 1bag  )     0.7777   0.9999   2.4756 (   0   10   21)   0     0.7777   0.9999    9   7
( 2879 1ji1_A)  (  367 1bf2  )     0.8761   0.7923   2.4508 (   1   18   28)   0     0.8761   0.7923    9  10
( 2879 1ji1_A)  ( 1028 1e43_A)     0.7777   0.7777   3.1218 (   0   11   21)   0     0.7777   0.7777    9   9
( 2879 1ji1_A)  ( 1729 1g5a_A)     0.7603   0.9438   2.0066 (   1   14   21)   0     0.7603   0.9438    9   7
( 2879 1ji1_A)  ( 1839 1gjw_A)     0.5555   0.7140   4.5502 (   0    4   10)   0     0.5555   0.7140    9   7
( 2879 1ji1_A)  ( 2063 1h3g_A)     0.9932   0.9932   3.3584 (   1   25   36)   0     0.9932   0.9932    9   9
( 2879 1ji1_A)  ( 2232 1hl9_A)     0.8882   0.8882   4.2628 (   0   19   28)   0     0.8882   0.8882    9   9
( 2879 1ji1_A)  ( 2311 1hx0_A)     0.8888   0.9999   2.3150 (   0   15   28)   0     0.8888   0.9999    9   8
( 2879 1ji1_A)  ( 2622 1iv8_A)     0.8803   0.9847   2.8523 (   1   20   28)   0     0.8803   0.9847    9   8
( 2879 1ji1_A)  ( 2687 1j0h_A)     0.8887   0.9996   3.2100 (   0   19   28)   0     0.8887   0.9996    9   8
( 2879 1ji1_A)  ( 2879 1ji1_A)     1.0000   1.0000   0.0000 (   0   26   36)   0     1.0000   1.0000    9   9
( 2879 1ji1_A)  ( 2882 1ji2_A)     0.8889   0.9999   1.6921 (   0   19   28)   0     0.8889   0.9999    9   8
( 2879 1ji1_A)  ( 3426 1ktb_A)     0.8728   0.9718   3.0672 (   1   17   28)   0     0.8728   0.9718    9   8
( 2879 1ji1_A)  ( 3839 1m53_A)     0.7777   0.9997   3.0397 (   0   13   21)   0     0.7777   0.9997    9   7
( 2879 1ji1_A)  ( 3878 1m7x_A)     0.7777   0.9998   2.6741 (   0   11   21)   0     0.7777   0.9998    9   7
( 2879 1ji1_A)  ( 4072 1mxg_A)     0.6667   0.8571   2.1659 (   0    7   15)   0     0.6667   0.8571    9   7
( 2879 1ji1_A)  ( 4335 1nof_A)     0.8884   0.7997   3.9521 (   0   16   28)   0     0.8884   0.7997    9  10
( 2879 1ji1_A)  ( 4646 1ogs_A)     0.6664   0.4999   4.5845 (   0    5   15)   0     0.8885   0.6666    9  12
( 2879 1ji1_A)  ( 5341 1qho_A)     0.8687   0.9648   3.2268 (   1   16   28)   0     0.8861   0.9951    9   8
( 2879 1ji1_A)  ( 5472 1qw9_A)     0.8880   0.7270   4.5103 (   0   17   28)   0     0.8880   0.7270    9  11
( 2879 1ji1_A)  ( 5546 1r46_A)     0.8784   0.8784   2.9872 (   1   19   28)   0     0.8784   0.8784    9   9
( 2879 1ji1_A)  ( 5953 1uas_A)     0.8887   0.9997   2.8914 (   0   20   28)   0     0.8887   0.9997    9   8
( 2879 1ji1_A)  ( 6023 1uhv_A)     0.8880   0.7270   4.4687 (   0   11   28)   0     0.8880   0.7270    9  11
( 2879 1ji1_A)  ( 6067 1uok  )     0.7777   0.9997   3.0850 (   0   10   21)   0     0.7777   0.9997    9   7
( 2879 1ji1_A)  ( 6644 7taa  )     0.8888   0.8888   2.6874 (   0   20   28)   0     0.8888   0.8888    9   9

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