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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2882 1ji2_A)  (  335 1bag  )     0.8749   0.9998   2.6323 (   0   13   21)   0     0.8749   0.9998    8   7
( 2882 1ji2_A)  (  367 1bf2  )     0.9772   0.7923   3.0166 (   1   18   28)   0     0.9772   0.7923    8  10
( 2882 1ji2_A)  ( 1028 1e43_A)     0.8747   0.7776   3.4766 (   0   14   21)   0     0.8747   0.7776    8   9
( 2882 1ji2_A)  ( 1729 1g5a_A)     0.8444   0.9437   2.3379 (   1   14   21)   0     0.8736   0.9972    8   7
( 2882 1ji2_A)  ( 1839 1gjw_A)     0.8343   0.9263   4.8106 (   1   13   21)   0     0.8343   0.9263    8   7
( 2882 1ji2_A)  ( 2063 1h3g_A)     0.9996   0.8887   3.1364 (   0   22   28)   0     0.9996   0.8887    8   9
( 2882 1ji2_A)  ( 2232 1hl9_A)     0.9993   0.8885   3.7375 (   0   21   28)   0     0.9993   0.8885    8   9
( 2882 1ji2_A)  ( 2311 1hx0_A)     0.9998   0.9998   2.5049 (   0   16   28)   0     0.9998   0.9998    8   8
( 2882 1ji2_A)  ( 2622 1iv8_A)     0.9813   0.9813   3.2019 (   1   19   28)   0     0.9813   0.9813    8   8
( 2882 1ji2_A)  ( 2687 1j0h_A)     0.9993   0.9993   3.6231 (   0   19   28)   0     0.9993   0.9993    8   8
( 2882 1ji2_A)  ( 2879 1ji1_A)     0.9999   0.8889   1.6921 (   0   19   28)   0     0.9999   0.8889    8   9
( 2882 1ji2_A)  ( 2882 1ji2_A)     1.0000   1.0000   0.0000 (   0   22   28)   0     1.0000   1.0000    8   8
( 2882 1ji2_A)  ( 3426 1ktb_A)     0.8748   0.8748   3.0513 (   0   13   21)   0     0.8748   0.8748    8   8
( 2882 1ji2_A)  ( 3839 1m53_A)     0.8748   0.9997   3.0789 (   0   12   21)   0     0.8748   0.9997    8   7
( 2882 1ji2_A)  ( 3878 1m7x_A)     0.8748   0.9997   2.9750 (   0   12   21)   0     0.8748   0.9997    8   7
( 2882 1ji2_A)  ( 4072 1mxg_A)     0.7500   0.8571   2.2377 (   0   10   15)   0     0.7500   0.8571    8   7
( 2882 1ji2_A)  ( 4335 1nof_A)     0.9993   0.7998   3.6755 (   0   17   28)   0     0.9993   0.7998    8  10
( 2882 1ji2_A)  ( 4646 1ogs_A)     0.7495   0.4999   4.7847 (   0    5   15)   0     0.7495   0.4999    8  12
( 2882 1ji2_A)  ( 5341 1qho_A)     0.7651   0.7651   3.5597 (   2   17   28)   0     0.9519   0.9519    8   8
( 2882 1ji2_A)  ( 5472 1qw9_A)     0.8745   0.6363   3.9770 (   0   11   21)   0     0.8745   0.6363    8  11
( 2882 1ji2_A)  ( 5546 1r46_A)     0.9811   0.8782   3.5557 (   1   19   28)   0     0.9811   0.8782    8   9
( 2882 1ji2_A)  ( 5953 1uas_A)     0.9997   0.9997   3.0265 (   0   19   28)   0     0.9997   0.9997    8   8
( 2882 1ji2_A)  ( 6023 1uhv_A)     0.9988   0.7270   4.1891 (   0   11   28)   0     0.9988   0.7270    8  11
( 2882 1ji2_A)  ( 6067 1uok  )     0.8749   0.9997   2.9210 (   0   10   21)   0     0.8749   0.9997    8   7
( 2882 1ji2_A)  ( 6644 7taa  )     0.9998   0.8888   2.5812 (   0   22   28)   0     0.9998   0.8888    8   9

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