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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  335 1bag  )  (  335 1bag  )     1.0000   1.0000   0.0000 (   0   14   21)   0     1.0000   1.0000    7   7
(  335 1bag  )  (  367 1bf2  )     0.9994   0.6999   3.5358 (   0    9   21)   0     0.9994   0.6999    7  10
(  335 1bag  )  ( 1028 1e43_A)     0.8571   0.6666   2.6468 (   0   10   15)   0     0.8571   0.6666    7   9
(  335 1bag  )  ( 1729 1g5a_A)     0.9996   0.9996   3.2036 (   0   11   21)   0     0.9996   0.9996    7   7
(  335 1bag  )  ( 1839 1gjw_A)     0.5705   0.5705   7.9795 (   0    1    6)   0     0.5705   0.5705    7   7
(  335 1bag  )  ( 2063 1h3g_A)     0.9994   0.7776   3.4841 (   0   13   21)   0     0.9994   0.7776    7   9
(  335 1bag  )  ( 2232 1hl9_A)     0.9990   0.7775   4.0458 (   0   14   21)   0     0.9997   0.7777    7   9
(  335 1bag  )  ( 2311 1hx0_A)     0.9999   0.8750   1.7406 (   0   11   21)   0     0.9999   0.8750    7   8
(  335 1bag  )  ( 2622 1iv8_A)     0.9995   0.8748   3.3223 (   0   10   21)   0     0.9995   0.8748    7   8
(  335 1bag  )  ( 2687 1j0h_A)     0.8565   0.7497   4.3044 (   0    8   15)   0     0.8565   0.7497    7   8
(  335 1bag  )  ( 2879 1ji1_A)     0.9999   0.7777   2.4756 (   0   10   21)   0     0.9999   0.7777    7   9
(  335 1bag  )  ( 2882 1ji2_A)     0.9998   0.8749   2.6323 (   0   13   21)   0     0.9998   0.8749    7   8
(  335 1bag  )  ( 3426 1ktb_A)     0.8566   0.7497   4.2335 (   0    8   15)   0     0.9961   0.8730    7   8
(  335 1bag  )  ( 3839 1m53_A)     0.8567   0.8567   4.0517 (   0    7   15)   0     0.8567   0.8567    7   7
(  335 1bag  )  ( 3878 1m7x_A)     0.7138   0.7138   5.0641 (   0    5   10)   0     0.7138   0.7138    7   7
(  335 1bag  )  ( 4072 1mxg_A)     0.8571   0.8571   2.5786 (   0    9   15)   0     0.8571   0.8571    7   7
(  335 1bag  )  ( 4335 1nof_A)     0.9993   0.6999   3.7307 (   0   10   21)   0     0.9993   0.6999    7  10
(  335 1bag  )  ( 4646 1ogs_A)     0.8564   0.4999   4.5531 (   0    5   15)   0     0.8564   0.4999    7  12
(  335 1bag  )  ( 5341 1qho_A)     0.8568   0.7498   3.7730 (   0    7   15)   0     0.9054   0.8217    7   8
(  335 1bag  )  ( 5472 1qw9_A)     0.9990   0.6363   4.0173 (   0    9   21)   0     0.9990   0.6363    7  11
(  335 1bag  )  ( 5546 1r46_A)     0.9992   0.7775   3.8637 (   0   10   21)   0     0.9992   0.7775    7   9
(  335 1bag  )  ( 5953 1uas_A)     0.9992   0.8746   3.7824 (   0   10   21)   0     0.9992   0.8746    7   8
(  335 1bag  )  ( 6023 1uhv_A)     0.5714   0.3636   3.0051 (   0    0    6)   0     0.5714   0.3857    7  11
(  335 1bag  )  ( 6067 1uok  )     0.8565   0.8565   4.3723 (   0    5   15)   0     0.9982   0.9982    7   7
(  335 1bag  )  ( 6644 7taa  )     0.9996   0.7777   3.1238 (   0   13   21)   0     0.9996   0.7777    7   9

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