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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  367 1bf2  )  (  335 1bag  )     0.6999   0.9994   3.5358 (   0    9   21)   0     0.6999   0.9994   10   7
(  367 1bf2  )  (  367 1bf2  )     1.0000   1.0000   0.0000 (   0   32   45)   0     1.0000   1.0000   10  10
(  367 1bf2  )  ( 1028 1e43_A)     0.7000   0.7777   2.5922 (   0   10   21)   0     0.7000   0.7777   10   9
(  367 1bf2  )  ( 1729 1g5a_A)     0.7000   0.9999   2.1049 (   0   12   21)   0     0.7000   0.9999   10   7
(  367 1bf2  )  ( 1839 1gjw_A)     0.6633   0.8406   3.6097 (   1   10   21)   0     0.6633   0.8406   10   7
(  367 1bf2  )  ( 2063 1h3g_A)     0.7923   0.8760   2.6755 (   1   18   28)   0     0.7923   0.8760   10   9
(  367 1bf2  )  ( 2232 1hl9_A)     0.6999   0.7776   3.6010 (   0   11   21)   0     0.6999   0.7776   10   9
(  367 1bf2  )  ( 2311 1hx0_A)     0.7845   0.9557   2.9683 (   1   15   28)   0     0.7845   0.9557   10   8
(  367 1bf2  )  ( 2622 1iv8_A)     0.8000   0.9999   2.1524 (   0   18   28)   0     0.8000   0.9999   10   8
(  367 1bf2  )  ( 2687 1j0h_A)     0.7904   0.9720   2.6785 (   1   17   28)   0     0.7904   0.9720   10   8
(  367 1bf2  )  ( 2879 1ji1_A)     0.7923   0.8761   2.4508 (   1   18   28)   0     0.7923   0.8761   10   9
(  367 1bf2  )  ( 2882 1ji2_A)     0.7923   0.9772   3.0166 (   1   18   28)   0     0.7923   0.9772   10   8
(  367 1bf2  )  ( 3426 1ktb_A)     0.7000   0.8749   2.7065 (   0   10   21)   0     0.7000   0.8749   10   8
(  367 1bf2  )  ( 3839 1m53_A)     0.7000   0.9999   2.2930 (   0   11   21)   0     0.7000   0.9999   10   7
(  367 1bf2  )  ( 3878 1m7x_A)     0.7000   0.9998   2.6050 (   0    9   21)   0     0.7000   0.9998   10   7
(  367 1bf2  )  ( 4072 1mxg_A)     0.6000   0.8571   2.3827 (   0    7   15)   0     0.6000   0.8571   10   7
(  367 1bf2  )  ( 4335 1nof_A)     0.7998   0.7998   3.3899 (   0   15   28)   0     0.7998   0.7998   10  10
(  367 1bf2  )  ( 4646 1ogs_A)     0.4999   0.4166   4.5327 (   0    4   10)   0     0.4999   0.4488   10  12
(  367 1bf2  )  ( 5341 1qho_A)     0.7997   0.9992   3.7742 (   0   15   28)   0     0.7997   0.9992   10   8
(  367 1bf2  )  ( 5472 1qw9_A)     0.7999   0.7272   2.9467 (   0   16   28)   0     0.7999   0.7272   10  11
(  367 1bf2  )  ( 5546 1r46_A)     0.7998   0.8885   3.5619 (   0   17   28)   0     0.7998   0.8885   10   9
(  367 1bf2  )  ( 5953 1uas_A)     0.7922   0.9771   3.2572 (   1   18   28)   0     0.7922   0.9771   10   8
(  367 1bf2  )  ( 6023 1uhv_A)     0.6999   0.6363   3.2249 (   0    6   21)   0     0.6999   0.6363   10  11
(  367 1bf2  )  ( 6067 1uok  )     0.7000   0.9999   2.3620 (   0   10   21)   0     0.7000   0.9999   10   7
(  367 1bf2  )  ( 6644 7taa  )     0.7923   0.8760   2.9648 (   1   18   28)   0     0.7923   0.8760   10   9

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