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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3839 1m53_A)  (  335 1bag  )     0.8567   0.8567   4.0517 (   0    7   15)   0     0.8567   0.8567    7   7
( 3839 1m53_A)  (  367 1bf2  )     0.9999   0.7000   2.2930 (   0   11   21)   0     0.9999   0.7000    7  10
( 3839 1m53_A)  ( 1028 1e43_A)     0.9987   0.7774   4.2686 (   0   11   21)   0     0.9987   0.7774    7   9
( 3839 1m53_A)  ( 1729 1g5a_A)     0.8571   0.8571   2.5735 (   0    8   15)   0     0.8571   0.8571    7   7
( 3839 1m53_A)  ( 1839 1gjw_A)     0.7141   0.7141   3.8424 (   0    4   10)   0     0.7141   0.7141    7   7
( 3839 1m53_A)  ( 2063 1h3g_A)     0.9999   0.7778   1.7907 (   0   13   21)   0     0.9999   0.7778    7   9
( 3839 1m53_A)  ( 2232 1hl9_A)     0.9988   0.7774   4.2543 (   0   13   21)   0     0.9988   0.7774    7   9
( 3839 1m53_A)  ( 2311 1hx0_A)     0.9990   0.8745   4.0232 (   0    9   21)   0     0.9990   0.8745    7   8
( 3839 1m53_A)  ( 2622 1iv8_A)     0.9998   0.8749   2.7509 (   0   13   21)   0     0.9998   0.8749    7   8
( 3839 1m53_A)  ( 2687 1j0h_A)     0.9999   0.8749   2.4643 (   0   13   21)   0     0.9999   0.8749    7   8
( 3839 1m53_A)  ( 2879 1ji1_A)     0.9997   0.7777   3.0397 (   0   13   21)   0     0.9997   0.7777    7   9
( 3839 1m53_A)  ( 2882 1ji2_A)     0.9997   0.8748   3.0789 (   0   12   21)   0     0.9997   0.8748    7   8
( 3839 1m53_A)  ( 3426 1ktb_A)     0.9995   0.8747   3.4077 (   0   12   21)   0     0.9995   0.8747    7   8
( 3839 1m53_A)  ( 3839 1m53_A)     1.0000   1.0000   0.0000 (   0   13   21)   0     1.0000   1.0000    7   7
( 3839 1m53_A)  ( 3878 1m7x_A)     0.9998   0.9998   2.7097 (   0   11   21)   0     0.9998   0.9998    7   7
( 3839 1m53_A)  ( 4072 1mxg_A)     0.7142   0.7142   3.3149 (   0    4   10)   0     0.7142   0.7142    7   7
( 3839 1m53_A)  ( 4335 1nof_A)     0.9994   0.6999   3.5993 (   0   11   21)   0     0.9994   0.6999    7  10
( 3839 1m53_A)  ( 4646 1ogs_A)     0.7136   0.4166   5.5962 (   0    4   10)   0     0.9992   0.5833    7  12
( 3839 1m53_A)  ( 5341 1qho_A)     0.9995   0.8747   3.3977 (   0   11   21)   0     0.9995   0.8747    7   8
( 3839 1m53_A)  ( 5472 1qw9_A)     0.9998   0.6363   2.5243 (   0   11   21)   0     0.9998   0.6363    7  11
( 3839 1m53_A)  ( 5546 1r46_A)     0.9998   0.7777   2.7908 (   0   13   21)   0     0.9998   0.7777    7   9
( 3839 1m53_A)  ( 5953 1uas_A)     0.9990   0.8745   4.0412 (   0   13   21)   0     0.9990   0.8745    7   8
( 3839 1m53_A)  ( 6023 1uhv_A)     0.9988   0.6362   4.1918 (   0    6   21)   0     0.9988   0.6362    7  11
( 3839 1m53_A)  ( 6067 1uok  )     0.9999   0.9999   1.0856 (   0   10   21)   0     0.9999   0.9999    7   7
( 3839 1m53_A)  ( 6644 7taa  )     0.9994   0.7776   3.5486 (   0   13   21)   0     0.9994   0.7776    7   9

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