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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4335 1nof_A)  (  335 1bag  )     0.6999   0.9993   3.7307 (   0   10   21)   0     0.6999   0.9993   10   7
( 4335 1nof_A)  (  367 1bf2  )     0.7998   0.7998   3.3899 (   0   15   28)   0     0.7998   0.7998   10  10
( 4335 1nof_A)  ( 1028 1e43_A)     0.6999   0.7777   3.0890 (   0   12   21)   0     0.6999   0.7777   10   9
( 4335 1nof_A)  ( 1729 1g5a_A)     0.6998   0.9987   4.2848 (   0   11   21)   0     0.6998   0.9987   10   7
( 4335 1nof_A)  ( 1839 1gjw_A)     0.5000   0.7141   3.9792 (   0    4   10)   0     0.5000   0.7141   10   7
( 4335 1nof_A)  ( 2063 1h3g_A)     0.7998   0.8885   3.7060 (   0   17   28)   0     0.7998   0.8885   10   9
( 4335 1nof_A)  ( 2232 1hl9_A)     0.5998   0.6664   4.8709 (   0   10   15)   0     0.5998   0.6664   10   9
( 4335 1nof_A)  ( 2311 1hx0_A)     0.6999   0.8747   3.6375 (   0    9   21)   0     0.6999   0.8747   10   8
( 4335 1nof_A)  ( 2622 1iv8_A)     0.7997   0.9992   3.8496 (   0   17   28)   0     0.7997   0.9992   10   8
( 4335 1nof_A)  ( 2687 1j0h_A)     0.7996   0.9986   4.3552 (   0   17   28)   0     0.7996   0.9986   10   8
( 4335 1nof_A)  ( 2879 1ji1_A)     0.7997   0.8884   3.9521 (   0   16   28)   0     0.7997   0.8884   10   9
( 4335 1nof_A)  ( 2882 1ji2_A)     0.7998   0.9993   3.6755 (   0   17   28)   0     0.7998   0.9993   10   8
( 4335 1nof_A)  ( 3426 1ktb_A)     0.6998   0.8745   4.0577 (   0   11   21)   0     0.6998   0.8745   10   8
( 4335 1nof_A)  ( 3839 1m53_A)     0.6999   0.9994   3.5993 (   0   11   21)   0     0.6999   0.9994   10   7
( 4335 1nof_A)  ( 3878 1m7x_A)     0.6998   0.9988   4.1906 (   0   10   21)   0     0.6998   0.9988   10   7
( 4335 1nof_A)  ( 4072 1mxg_A)     0.6000   0.8569   3.3602 (   0    8   15)   0     0.6000   0.8569   10   7
( 4335 1nof_A)  ( 4335 1nof_A)     1.0000   1.0000   0.0000 (   0   33   45)   0     1.0000   1.0000   10  10
( 4335 1nof_A)  ( 4646 1ogs_A)     0.5999   0.5000   3.8510 (   0    5   15)   0     0.9999   0.8333   10  12
( 4335 1nof_A)  ( 5341 1qho_A)     0.6993   0.8730   5.6643 (   0   11   21)   0     0.6993   0.8730   10   8
( 4335 1nof_A)  ( 5472 1qw9_A)     0.9993   0.9087   3.6351 (   0   29   45)   0     0.9993   0.9087   10  11
( 4335 1nof_A)  ( 5546 1r46_A)     0.7990   0.8872   5.3181 (   0   16   28)   0     0.7990   0.8872   10   9
( 4335 1nof_A)  ( 5953 1uas_A)     0.7996   0.9989   4.1410 (   0   16   28)   0     0.7996   0.9989   10   8
( 4335 1nof_A)  ( 6023 1uhv_A)     0.8997   0.8180   3.2751 (   0   14   36)   0     0.8997   0.8180   10  11
( 4335 1nof_A)  ( 6067 1uok  )     0.6999   0.9993   3.7259 (   0   11   21)   0     0.6999   0.9993   10   7
( 4335 1nof_A)  ( 6644 7taa  )     0.7997   0.8884   3.8535 (   0   18   28)   0     0.7997   0.8884   10   9

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