------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [5341, 335]: Comparing 1qho_A and 1bag, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 42 (21 H + 21 S) secondary structure elements in 1bag, of which 7 satisfy the size requirements. 1.33366 [ 1.16715] ((37 . 36) (38 . 37) (39 . 38) (40 . 39) (41 . 40) (44 . 42)) 3.773 {0/7:15} B:0 1.60149 [ 1.40223] ((36 . 36) (37 . 37) (38 . 38) (39 . 39) (40 . 40)) 6.332 {0/5:10} B:0 2.00119 [ 1.75177] ((36 . 38) (37 . 39) (38 . 40) (40 . 42)) 7.067 {0/3:6} B:0 2.00279 [ 1.75416] ((36 . 37) (37 . 38) (38 . 39) (39 . 40)) 8.753 {0/2:6} B:0 2.00284 [ 1.75424] ((39 . 36) (40 . 37) (41 . 38) (44 . 40)) 8.791 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.8217 [and 1/min{score2}: 0.9054] [5341, 367]: Comparing 1qho_A and 1bf2, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 48 (24 H + 24 S) secondary structure elements in 1bf2, of which 10 satisfy the size requirements. 1.00077 [ 1.25040] ((36 . 38) (37 . 40) (38 . 42) (39 . 43) (40 . 44) (41 . 46) (43 . 47) (44 . 48)) 3.774 {0/15:28} B:0 1.14323 [ 1.42876] ((36 . 38) (37 . 40) (38 . 42) (39 . 43) (40 . 44) (43 . 47) (44 . 48)) 3.483 {0/10:21} B:0 1.33407 [ 1.66705] ((36 . 40) (37 . 42) (38 . 43) (39 . 44) (43 . 46) (44 . 47)) 4.632 {0/8:15} B:0 1.47173 [ 1.74382] ((36 . 40) (37 . 42) (38 . 43) (41 . 44) (43 . 46) (44 . 47)) 4.607 {1/9:15} B:0 1.60052 [ 2.00027] ((36 . 40) (37 . 42) (38 . 43) (39 . 44) (44 . 47)) 4.867 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.9992 [and 1/min{score2}: 0.7997] [5341, 1028]: Comparing 1qho_A and 1e43_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 39 (14 H + 25 S) secondary structure elements in 1e43_A, of which 9 satisfy the size requirements. 1.33405 [ 1.50050] ((36 . 31) (37 . 32) (38 . 33) (39 . 34) (40 . 36) (44 . 39)) 4.595 {0/7:15} B:0 1.60018 [ 1.80013] ((36 . 32) (37 . 33) (38 . 34) (41 . 36) (44 . 38)) 3.737 {0/5:10} B:0 1.60100 [ 1.80071] ((36 . 32) (37 . 33) (38 . 34) (39 . 36) (43 . 39)) 5.731 {0/5:10} B:0 2.00021 [ 2.25015] ((37 . 31) (38 . 32) (41 . 36) (44 . 38)) 4.607 {0/2:6} B:0 2.00061 [ 2.25043] ((36 . 32) (38 . 33) (39 . 36) (43 . 39)) 5.979 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.8031 [and 1/min{score2}: 0.7348] [5341, 1729]: Comparing 1qho_A and 1g5a_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 53 (30 H + 23 S) secondary structure elements in 1g5a_A, of which 7 satisfy the size requirements. 1.21643 [ 1.10364] ((37 . 47) (38 . 48) (39 . 49) (40 . 50) (41 . 51) (43 . 52) (44 . 53)) 3.038 {1/12:21} B:0 1.53848 [ 1.43955] ((37 . 47) (38 . 48) (39 . 49) (40 . 50) (43 . 52) (44 . 53)) 2.281 {1/8:15} B:0 1.60006 [ 1.40009] ((37 . 47) (38 . 48) (40 . 50) (41 . 51) (44 . 53)) 2.853 {0/6:10} B:0 1.60161 [ 1.40240] ((36 . 47) (37 . 48) (38 . 49) (39 . 50) (40 . 51)) 6.448 {0/6:10} B:0 2.00077 [ 1.75115] ((38 . 47) (40 . 49) (43 . 51) (44 . 52)) 6.342 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.8718 [and 1/min{score2}: 0.9938] [5341, 1839]: Comparing 1qho_A and 1gjw_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 58 (33 H + 25 S) secondary structure elements in 1gjw_A, of which 7 satisfy the size requirements. 1.60018 [ 1.40026] ((36 . 52) (37 . 53) (38 . 54) (40 . 57) (44 . 58)) 3.715 {0/4:10} B:0 1.81629 [ 1.75908] ((36 . 52) (37 . 53) (38 . 54) (39 . 55) (43 . 57) (44 . 58)) 4.518 {1/6:15} B:0 1.88572 [ 1.85883] ((36 . 52) (37 . 53) (38 . 54) (39 . 55) (41 . 56) (43 . 57) (44 . 58)) 5.131 {2/11:21} B:0 2.00012 [ 1.75018] ((36 . 52) (37 . 53) (38 . 54) (40 . 57)) 3.974 {0/3:6} B:0 2.00026 [ 1.75039] ((36 . 52) (37 . 53) (38 . 54) (41 . 58)) 4.839 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.6249 [and 1/min{score2}: 0.7142] [5341, 2063]: Comparing 1qho_A and 1h3g_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 50 (24 H + 26 S) secondary structure elements in 1h3g_A, of which 9 satisfy the size requirements. 1.21642 [ 1.33916] ((36 . 42) (37 . 43) (38 . 44) (39 . 45) (40 . 47) (43 . 49) (44 . 50)) 3.015 {1/12:21} B:0 1.53968 [ 1.65608] ((37 . 42) (38 . 43) (39 . 44) (40 . 45) (41 . 49) (43 . 50)) 5.856 {1/8:15} B:0 2.00079 [ 2.25056] ((37 . 42) (38 . 43) (39 . 44) (40 . 45)) 6.388 {0/3:6} B:0 2.00084 [ 2.25059] ((36 . 43) (37 . 44) (38 . 45) (41 . 49)) 6.472 {0/3:6} B:0 2.00094 [ 2.25066] ((36 . 43) (38 . 45) (39 . 47) (40 . 48)) 6.663 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.9486 [and 1/min{score2}: 0.8590] [5341, 2232]: Comparing 1qho_A and 1hl9_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 32 (16 H + 16 S) secondary structure elements in 1hl9_A, of which 9 satisfy the size requirements. 1.14384 [ 1.28641] ((36 . 24) (37 . 25) (38 . 26) (39 . 27) (40 . 28) (41 . 29) (44 . 32)) 4.430 {0/12:21} B:0 1.33369 [ 1.50025] ((36 . 24) (37 . 25) (38 . 26) (40 . 28) (41 . 29) (44 . 32)) 3.855 {0/10:15} B:0 1.42889 [ 1.56967] ((36 . 24) (37 . 25) (38 . 26) (40 . 28) (43 . 30) (44 . 32)) 4.803 {1/10:15} B:0 1.60218 [ 1.80153] ((36 . 25) (37 . 26) (38 . 27) (40 . 29) (41 . 30)) 6.960 {0/6:10} B:0 1.60248 [ 1.80175] ((37 . 24) (38 . 25) (40 . 27) (41 . 28) (44 . 30)) 7.191 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.8742 [and 1/min{score2}: 0.7774] [5341, 2311]: Comparing 1qho_A and 1hx0_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 45 (21 H + 24 S) secondary structure elements in 1hx0_A, of which 8 satisfy the size requirements. 1.50777 [ 1.50777] ((36 . 35) (37 . 36) (38 . 37) (39 . 38) (40 . 39) (41 . 42) (43 . 43) (44 . 44)) 3.843 {2/14:28} B:0 1.60118 [ 1.60118] ((36 . 36) (37 . 37) (38 . 38) (39 . 39) (40 . 42)) 5.972 {0/5:10} B:0 1.60242 [ 1.60242] ((37 . 35) (38 . 36) (40 . 38) (41 . 39) (43 . 42)) 7.145 {0/5:10} B:0 2.00076 [ 2.00076] ((37 . 39) (38 . 42) (39 . 43) (40 . 44)) 6.312 {0/3:6} B:0 2.00266 [ 2.00266] ((36 . 37) (37 . 38) (38 . 39) (39 . 42)) 8.648 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.9975 [and 1/min{score2}: 0.9975] [5341, 2622]: Comparing 1qho_A and 1iv8_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 62 (35 H + 27 S) secondary structure elements in 1iv8_A, of which 8 satisfy the size requirements. 1.00065 [ 1.00065] ((36 . 55) (37 . 56) (38 . 57) (39 . 58) (40 . 59) (41 . 60) (43 . 61) (44 . 62)) 3.613 {0/16:28} B:0 1.33378 [ 1.33378] ((36 . 55) (37 . 56) (38 . 57) (39 . 58) (40 . 59) (41 . 62)) 4.078 {0/8:15} B:0 1.33381 [ 1.33381] ((36 . 56) (37 . 57) (38 . 58) (39 . 59) (43 . 60) (44 . 61)) 4.160 {0/9:15} B:0 2.00019 [ 2.00019] ((37 . 55) (38 . 56) (40 . 58) (43 . 62)) 4.472 {0/4:6} B:0 2.00026 [ 2.00026] ((37 . 55) (38 . 56) (41 . 61) (43 . 62)) 4.838 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.9994 [and 1/min{score2}: 0.9994] [5341, 2687]: Comparing 1qho_A and 1j0h_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 52 (23 H + 29 S) secondary structure elements in 1j0h_A, of which 8 satisfy the size requirements. 1.14300 [ 1.14300] ((36 . 45) (37 . 46) (38 . 47) (39 . 48) (40 . 49) (43 . 51) (44 . 52)) 2.736 {0/11:21} B:0 1.60034 [ 1.60034] ((36 . 45) (39 . 48) (40 . 49) (41 . 50) (44 . 52)) 4.386 {0/6:10} B:0 1.60193 [ 1.60193] ((36 . 46) (37 . 47) (38 . 48) (39 . 49) (40 . 50)) 6.749 {0/6:10} B:0 2.00069 [ 2.00069] ((37 . 45) (38 . 46) (40 . 48) (41 . 49)) 6.175 {0/4:6} B:0 2.00113 [ 2.00113] ((37 . 45) (38 . 46) (40 . 48) (44 . 52)) 6.971 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.8749 [and 1/min{score2}: 0.8749] [5341, 2879]: Comparing 1qho_A and 1ji1_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 59 (24 H + 35 S) secondary structure elements in 1ji1_A, of which 9 satisfy the size requirements. 1.03651 [ 1.15116] ((36 . 51) (37 . 52) (38 . 53) (39 . 54) (40 . 56) (41 . 57) (43 . 58) (44 . 59)) 3.227 {1/16:28} B:0 1.14307 [ 1.28586] ((36 . 51) (37 . 52) (38 . 53) (39 . 54) (40 . 56) (41 . 57) (44 . 59)) 3.027 {0/12:21} B:0 1.60147 [ 1.80104] ((36 . 52) (37 . 53) (38 . 54) (39 . 56) (40 . 57)) 6.309 {0/6:10} B:0 1.81040 [ 1.95762] ((37 . 51) (38 . 52) (40 . 54) (41 . 56) (43 . 57)) 6.286 {1/7:10} B:0 2.00048 [ 2.25033] ((36 . 52) (37 . 53) (38 . 54) (41 . 58)) 5.622 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.9951 [and 1/min{score2}: 0.8861] [5341, 2882]: Comparing 1qho_A and 1ji2_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 54 (26 H + 28 S) secondary structure elements in 1ji2_A, of which 8 satisfy the size requirements. 1.30700 [ 1.30700] ((36 . 46) (37 . 47) (38 . 48) (39 . 49) (40 . 51) (41 . 52) (43 . 53) (44 . 54)) 3.560 {2/17:28} B:0 1.60159 [ 1.60159] ((36 . 47) (37 . 48) (38 . 49) (39 . 51) (40 . 52)) 6.431 {0/6:10} B:0 2.00042 [ 2.00042] ((37 . 46) (38 . 47) (40 . 49) (41 . 51)) 5.438 {0/4:6} B:0 2.00068 [ 2.00068] ((37 . 46) (38 . 47) (39 . 48) (40 . 49)) 6.142 {0/3:6} B:0 2.00199 [ 2.00199] ((39 . 46) (40 . 47) (41 . 48) (44 . 51)) 8.041 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.9519 [and 1/min{score2}: 0.9519] [5341, 3426]: Comparing 1qho_A and 1ktb_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 31 (14 H + 17 S) secondary structure elements in 1ktb_A, of which 8 satisfy the size requirements. 1.21645 [ 1.21645] ((36 . 22) (37 . 23) (38 . 24) (39 . 25) (40 . 27) (43 . 30) (44 . 31)) 3.143 {1/12:21} B:0 1.60085 [ 1.60085] ((36 . 23) (37 . 24) (38 . 25) (39 . 27) (41 . 30)) 5.503 {0/5:10} B:0 2.00070 [ 2.00070] ((37 . 22) (38 . 23) (40 . 25) (41 . 27)) 6.185 {0/4:6} B:0 2.00152 [ 2.00152] ((39 . 22) (40 . 23) (41 . 24) (44 . 27)) 7.512 {0/2:6} B:0 2.59921 [ 2.59921] ((36 . 22) (37 . 23) (38 . 24) (39 . 25) (44 . 30)) 6.440 {1/4:10} B:0 SIMILARITY (1/min{score1}): 0.8221 [and 1/min{score2}: 0.8221] [5341, 3839]: Comparing 1qho_A and 1m53_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 46 (26 H + 20 S) secondary structure elements in 1m53_A, of which 7 satisfy the size requirements. 1.14320 [ 1.00051] ((36 . 40) (37 . 41) (38 . 42) (39 . 43) (40 . 44) (43 . 45) (44 . 46)) 3.398 {0/11:21} B:0 2.00036 [ 1.75054] ((37 . 40) (38 . 41) (40 . 43) (41 . 44)) 5.249 {0/4:6} B:0 2.00080 [ 1.75119] ((36 . 41) (37 . 42) (38 . 43) (39 . 44)) 6.394 {0/3:6} B:0 2.00203 [ 1.75302] ((39 . 40) (40 . 41) (41 . 42) (44 . 44)) 8.078 {0/2:6} B:0 2.00295 [ 1.75440] ((36 . 42) (37 . 43) (38 . 44) (40 . 45)) 8.875 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.8747 [and 1/min{score2}: 0.9995] [5341, 3878]: Comparing 1qho_A and 1m7x_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 48 (22 H + 26 S) secondary structure elements in 1m7x_A, of which 7 satisfy the size requirements. 1.14310 [ 1.00036] ((36 . 40) (37 . 41) (38 . 42) (39 . 43) (40 . 44) (43 . 47) (44 . 48)) 3.107 {0/10:21} B:0 1.60212 [ 1.40316] ((37 . 40) (38 . 41) (39 . 42) (40 . 43) (41 . 44)) 6.913 {0/4:10} B:0 2.00070 [ 1.75104] ((36 . 41) (37 . 42) (38 . 43) (39 . 44)) 6.186 {0/3:6} B:0 2.00153 [ 1.75228] ((39 . 40) (40 . 41) (41 . 42) (44 . 44)) 7.524 {0/2:6} B:0 3.43663 [ 3.39510] ((40 . 41) (41 . 42) (43 . 43) (44 . 44)) 6.610 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.8748 [and 1/min{score2}: 0.9996] [5341, 4072]: Comparing 1qho_A and 1mxg_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 39 (17 H + 22 S) secondary structure elements in 1mxg_A, of which 7 satisfy the size requirements. 1.60283 [ 1.40421] ((37 . 30) (38 . 31) (39 . 33) (40 . 34) (43 . 39)) 7.427 {0/5:10} B:0 1.64548 [ 1.56659] ((38 . 30) (39 . 31) (40 . 33) (41 . 34) (43 . 35) (44 . 39)) 4.380 {1/7:15} B:0 2.00157 [ 1.75235] ((36 . 31) (37 . 33) (38 . 34) (40 . 39)) 7.582 {0/4:6} B:0 2.00249 [ 1.75371] ((36 . 30) (37 . 31) (38 . 33) (39 . 34)) 8.504 {0/3:6} B:0 3.43700 [ 3.39549] ((40 . 30) (41 . 31) (43 . 33) (44 . 34)) 8.765 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.7491 [and 1/min{score2}: 0.8555] [5341, 4335]: Comparing 1qho_A and 1nof_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 29 (11 H + 18 S) secondary structure elements in 1nof_A, of which 10 satisfy the size requirements. 1.14548 [ 1.42992] ((36 . 22) (37 . 23) (38 . 24) (39 . 25) (40 . 26) (41 . 27) (44 . 29)) 5.664 {0/11:21} B:0 1.33476 [ 1.66740] ((36 . 22) (37 . 23) (38 . 24) (39 . 25) (40 . 26) (43 . 28)) 5.462 {0/10:15} B:0 1.33504 [ 1.66754] ((36 . 22) (37 . 23) (38 . 24) (39 . 25) (40 . 26) (41 . 27)) 5.712 {0/9:15} B:0 1.33531 [ 1.66768] ((37 . 23) (38 . 24) (39 . 25) (40 . 26) (41 . 27) (44 . 29)) 5.920 {0/6:15} B:0 1.60135 [ 2.00069] ((36 . 23) (37 . 24) (38 . 25) (40 . 27) (41 . 28)) 6.168 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.8730 [and 1/min{score2}: 0.6993] [5341, 4646]: Comparing 1qho_A and 1ogs_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 38 (16 H + 22 S) secondary structure elements in 1ogs_A, of which 12 satisfy the size requirements. 1.60114 [ 2.40034] ((36 . 33) (37 . 34) (38 . 35) (39 . 36) (40 . 37)) 5.923 {0/4:10} B:0 2.00042 [ 3.00013] ((37 . 33) (38 . 34) (40 . 36) (41 . 37)) 5.460 {0/3:6} B:0 2.00089 [ 3.00027] ((36 . 34) (37 . 35) (38 . 36) (39 . 37)) 6.581 {0/1:6} B:0 2.00112 [ 3.00033] ((39 . 33) (40 . 34) (41 . 35) (44 . 37)) 6.959 {0/1:6} B:0 2.00139 [ 3.00041] ((38 . 33) (41 . 36) (43 . 37) (44 . 38)) 7.356 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.6246 [and 1/min{score2}: 0.4166] [5341, 5341]: Comparing 1qho_A and 1qho_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. 1.00000 [ 1.00000] ((36 . 36) (37 . 37) (38 . 38) (39 . 39) (40 . 40) (41 . 41) (43 . 43) (44 . 44)) 0.000 {0/18:28} B:0 1.60170 [ 1.60170] ((36 . 37) (37 . 38) (38 . 39) (39 . 40) (41 . 43)) 6.543 {0/6:10} B:0 1.60170 [ 1.60170] ((37 . 36) (38 . 37) (39 . 38) (40 . 39) (43 . 41)) 6.543 {0/6:10} B:0 1.60214 [ 1.60214] ((36 . 37) (37 . 38) (39 . 40) (41 . 43) (43 . 44)) 6.925 {0/6:10} B:0 1.60214 [ 1.60214] ((37 . 36) (38 . 37) (40 . 39) (43 . 41) (44 . 43)) 6.925 {0/6:10} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [5341, 5472]: Comparing 1qho_A and 1qw9_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 40 (15 H + 25 S) secondary structure elements in 1qw9_A, of which 11 satisfy the size requirements. 1.00374 [ 1.37645] ((36 . 31) (37 . 34) (38 . 35) (39 . 36) (40 . 37) (41 . 38) (43 . 39) (44 . 40)) 5.605 {0/14:28} B:0 1.60034 [ 2.20013] ((36 . 34) (37 . 35) (38 . 36) (43 . 38) (44 . 39)) 4.369 {0/5:10} B:0 1.60330 [ 2.20127] ((37 . 30) (38 . 34) (39 . 35) (40 . 36) (41 . 37)) 7.723 {0/5:10} B:0 2.00078 [ 2.75030] ((36 . 34) (37 . 35) (38 . 36) (39 . 37)) 6.369 {0/3:6} B:0 2.00125 [ 2.75048] ((36 . 37) (37 . 38) (38 . 39) (39 . 40)) 7.150 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.9963 [and 1/min{score2}: 0.7265] [5341, 5546]: Comparing 1qho_A and 1r46_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 30 (13 H + 17 S) secondary structure elements in 1r46_A, of which 9 satisfy the size requirements. 1.00037 [ 1.12526] ((36 . 22) (37 . 23) (38 . 24) (39 . 25) (40 . 26) (41 . 28) (43 . 29) (44 . 30)) 3.136 {0/16:28} B:0 1.60067 [ 1.80047] ((36 . 23) (37 . 24) (38 . 25) (39 . 26) (41 . 29)) 5.172 {0/5:10} B:0 2.00105 [ 2.25074] ((36 . 26) (37 . 28) (38 . 29) (39 . 30)) 6.854 {0/2:6} B:0 2.00147 [ 2.25103] ((37 . 26) (38 . 28) (39 . 29) (40 . 30)) 7.449 {0/2:6} B:0 2.00182 [ 2.25128] ((39 . 22) (40 . 23) (41 . 24) (44 . 26)) 7.867 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.9996 [and 1/min{score2}: 0.8887] [5341, 5953]: Comparing 1qho_A and 1uas_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 29 (13 H + 16 S) secondary structure elements in 1uas_A, of which 8 satisfy the size requirements. 1.03721 [ 1.03721] ((36 . 21) (37 . 22) (38 . 23) (39 . 24) (40 . 26) (41 . 27) (43 . 28) (44 . 29)) 4.202 {1/16:28} B:0 1.60137 [ 1.60137] ((36 . 22) (37 . 23) (38 . 24) (39 . 26) (40 . 27)) 6.192 {0/6:10} B:0 2.00045 [ 2.00045] ((36 . 22) (37 . 23) (38 . 24) (41 . 28)) 5.538 {0/3:6} B:0 2.00063 [ 2.00063] ((37 . 21) (38 . 22) (41 . 26) (44 . 28)) 6.032 {0/2:6} B:0 2.00112 [ 2.00112] ((36 . 26) (37 . 27) (38 . 28) (39 . 29)) 6.960 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.9641 [and 1/min{score2}: 0.9641] [5341, 6023]: Comparing 1qho_A and 1uhv_A, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 41 (17 H + 24 S) secondary structure elements in 1uhv_A, of which 11 satisfy the size requirements. 1.60079 [ 2.20030] ((36 . 30) (37 . 31) (38 . 32) (39 . 33) (40 . 34)) 5.395 {0/2:10} B:0 2.00029 [ 2.75011] ((40 . 30) (41 . 31) (43 . 32) (44 . 33)) 4.957 {0/0:6} B:0 2.00030 [ 2.75012] ((38 . 33) (39 . 34) (43 . 37) (44 . 38)) 5.028 {0/1:6} B:0 2.00043 [ 2.75017] ((37 . 30) (38 . 31) (40 . 33) (41 . 34)) 5.490 {0/2:6} B:0 2.00059 [ 2.75023] ((36 . 31) (37 . 32) (38 . 33) (39 . 34)) 5.927 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.8718 [and 1/min{score2}: 0.6357] [5341, 6067]: Comparing 1qho_A and 1uok, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 49 (27 H + 22 S) secondary structure elements in 1uok, of which 7 satisfy the size requirements. 1.14310 [ 1.00037] ((36 . 43) (37 . 44) (38 . 45) (39 . 46) (40 . 47) (43 . 48) (44 . 49)) 3.131 {0/9:21} B:0 2.00046 [ 1.75069] ((37 . 43) (38 . 44) (40 . 46) (41 . 47)) 5.588 {0/3:6} B:0 2.00073 [ 1.75109] ((36 . 44) (37 . 45) (38 . 46) (39 . 47)) 6.259 {0/2:6} B:0 2.00213 [ 1.75318] ((39 . 43) (40 . 44) (41 . 45) (44 . 47)) 8.180 {0/2:6} B:0 3.43675 [ 3.39523] ((40 . 44) (41 . 45) (43 . 46) (44 . 47)) 7.552 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.8748 [and 1/min{score2}: 0.9996] [5341, 6644]: Comparing 1qho_A and 7taa, based on their crossing files. There are 62 (20 H + 42 S) secondary structure elements in 1qho_A, of which 8 satisfy the size requirements. There are 46 (24 H + 22 S) secondary structure elements in 7taa, of which 9 satisfy the size requirements. 1.14346 [ 1.28614] ((36 . 38) (37 . 39) (38 . 40) (39 . 41) (40 . 42) (41 . 43) (44 . 45)) 3.914 {0/12:21} B:0 1.26097 [ 1.33011] ((36 . 38) (37 . 39) (38 . 40) (39 . 41) (40 . 42) (41 . 43) (43 . 44) (44 . 45)) 4.037 {2/18:28} B:0 1.33676 [ 1.50241] ((36 . 39) (37 . 40) (38 . 41) (39 . 42) (40 . 43) (41 . 44)) 6.802 {0/9:15} B:0 1.81085 [ 1.95798] ((37 . 38) (38 . 39) (40 . 41) (41 . 42) (43 . 43)) 6.900 {1/7:10} B:0 2.00122 [ 2.25086] ((36 . 41) (37 . 42) (38 . 43) (40 . 45)) 7.120 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.9515 [and 1/min{score2}: 0.8607] -------------------------------------------------------------------------------------------------------------------------